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Report for CCDS15477.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15477.2 Public Mus musculus 1 Fcgr3 23 108 98 CCDS HistoryNCBI Gene:14131Re-query CCDS DB by CCDS ID:15477.2Re-query CCDS DB by GeneID:14131See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15477.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. It should be noted that an alternative downstream start exists, which would result in a protein that is 6 aa shorter at the N-terminus. Both start codons are well-conserved and have weak Kozak signals, so it is possible that leaky scanning by ribosomes will allow the use of the downstream start codon at least some of the time. SignalP3.0 predicts the presence of an N-terminal signal peptide in both the longer and shorter proteins, though the probability is slightly higher for the shorter shorter. There is currently no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15477.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164044.7 ENSMUSP00000131938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164044.7Link to Ensembl Protein Viewer:ENSMUSP00000131938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164044Re-query CCDS DB by Protein ID:ENSMUSP00000131938
Original member Current member NCBI NM_010188.5 NP_034318.2 Accepted alive Link to Nucleotide Sequence:NM_010188.5Link to Protein Sequence:NP_034318.2Re-query CCDS DB by Nucleotide ID:NM_010188Re-query CCDS DB by Protein ID:NP_034318Link to BLAST:NP_034318.2

Chromosomal Locations for CCDS 15477.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171051668 171051852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171053939 171054193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171057691 171057948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171058586 171058606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171059269 171059353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGACTTTGGACACCCAGATGTTTCAGAATGCACACTCTGGAAGCCAATGGCTACTTCCACCACTGACAA
TTCTGCTGCTGTTTGCTTTTGCAGACAGGCAGAGTGCAGCTCTTCCGAAGGCTGTGGTGAAACTGGACCC
CCCATGGATCCAGGTGCTCAAGGAAGACATGGTGACACTGATGTGCGAAGGGACCCACAACCCTGGGAAC
TCTTCTACTCAGTGGTTCCACAACTGGAGTTCCATCCGGAGCCAGGTCCAATCCAGCTACACGTTTAAGG
CCACAGTCAATGACAGTGGAGAATATCGGTGTCAAATGGAGCAGACCCGCCTCAGCGACCCTGTAGATCT
GGGAGTGATTTCTGACTGGCTGCTGCTCCAGACCCCTCAGCGGGTGTTTCTGGAAGGGGAAACCATCACG
CTAAGGTGCCATAGCTGGAGGAACAAACTACTGAACAGGATCTCGTTCTTCCATAATGAAAAATCCGTGA
GGTATCATCACTACAAAAGTAATTTCTCTATCCCAAAAGCCAACCACAGTCACAGTGGGGACTACTACTG
CAAAGGAAGTCTAGGAAGTACACAGCACCAGTCCAAGCCTGTCACCATCACTGTCCAAGACCCAGCAACT
ACATCCTCCATCTCTCTAGTCTGGTACCACACTGCTTTCTCCCTAGTGATGTGCCTCCTGTTTGCAGTGG
ACACGGGCCTTTATTTCTATGTACGGAGAAATCTTCAAACCCCGAGGGATTACTGGAGGAAGTCCCTGTC
AATCAGAAAGCACCAGGCTCCTCAAGACAAGTGA

Translation (267 aa):
MTLDTQMFQNAHSGSQWLLPPLTILLLFAFADRQSAALPKAVVKLDPPWIQVLKEDMVTLMCEGTHNPGN
SSTQWFHNWSSIRSQVQSSYTFKATVNDSGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQRVFLEGETIT
LRCHSWRNKLLNRISFFHNEKSVRYHHYKSNFSIPKANHSHSGDYYCKGSLGSTQHQSKPVTITVQDPAT
TSSISLVWYHTAFSLVMCLLFAVDTGLYFYVRRNLQTPRDYWRKSLSIRKHQAPQDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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