NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75992.1 Public Homo sapiens X CXorf49B 24 110 108 CCDS HistoryNCBI Gene:100132994Re-query CCDS DB by CCDS ID:75992.1Re-query CCDS DB by GeneID:100132994See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542739.3 ENSP00000482270.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542739.3Link to Ensembl Protein Viewer:ENSP00000482270.1Re-query CCDS DB by Nucleotide ID:ENST00000542739Re-query CCDS DB by Protein ID:ENSP00000482270
Original member Current member NCBI NM_001145139.2 NP_001138611.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145139.2Link to Protein Sequence:NP_001138611.1Re-query CCDS DB by Nucleotide ID:NM_001145139Re-query CCDS DB by Protein ID:NP_001138611Link to BLAST:NP_001138611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138611.1 514 A8MYA2 514 100% 0 0

Chromosomal Locations for CCDS 75992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71763424 71764647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71765224 71765380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71765924 71766000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71766283 71766328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71766883 71766923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGAGCTCCCCCGACAAGGTGTCCGTTTGTGGGGCCGGTTTCGACCTGGAGGGTGGCAAAAAGGCTGGCT
CCCGCACGGCCAGCCCCGGAGCCCCAGGGGCCCACAGCCACGGCCTCGATTTGGGGGTGCCGGGCAGCGG
CGATGGCAAGAGCGAGAGCGGGTTCACAGATCCAGAGGGCTTCAGCTTCGAGTCTGAGAGCGAATTGATA
GAGCAAGGAAGGGTGGTGCTCTGGGGCCGGGAAGGCCGGCCAGGCACCCCGGTGGATGACCAAGGGGACG
TTGTGGACTACTCATTCTACCTGGCTGACGAACCAGCCGCCATCGTGCCGCCGCCCAGCGTCCAGGGACA
CCCGTTCCCAGAAGGTGCCGCTGCCGAAGGGTCGGCTGAGAATTGGGCAGATGCGGAGGTCGGTCCCAGT
GGGAGAGACGTGCTGGGCCACAGCCCTGGAAAATGGCAGCAGGCCTCTGCCGGCCGTCTCCACCTCTGCG
GTCCTGGGCCAGTGCGGGCCTGGAAGAACCCGGAAAGGGGCTCGAAGAGCAGATGGAGCCTCCGCGTGGA
TCCCCAGCAGCCCTCTGCGAAAGGCCCCACCAGGCTGCCTACCCACGACTCTGATTCCGCAGATGAGAGC
AGCGACTTACCACTGATGAAGGTAGGCATTTGCCGCAACGAAGGAAGCCAGGCCAAGCCCGGCAGCCCCA
AGAAGCGAGCAGACACATCCAGACAGGCAAGCTTCCACTGCAAGGAGAGTTACCTGCCTGTGCCGGGCCG
TTTCCTGACCTCTGCTCCCCGCGGACTCACTCCAGTCGCAGAGAGGCCGGCTGTGGGAGAGCTGGAGGAC
TCTCCCCAGAAGAAAATGCAGAGCAGGGCCTGGGGAAAGGTGGAGGTCAGGCCCAGCTGCTCAGGAGCTG
CTGCTGCAGGGGCCCTGCCCCAGGGCCTTTCGAGGAGGAAGATGGCCGGGGGGAAGAAGTCCCTAGGGGG
TGCCTCTCAACTGGCCCTGGGGAGAGGCTTTCCTGCCTGCGGAGAGAGACTCTCAGCCGCTCCCCCGGAG
CCGGCCACCTTCCCGCCATTCTCTGGTGTGCGGCCACAGGGGATGTCCAAGAAACCCCAAAAGCCTAAGC
ACAGCAGCCCTGGGAAGAAACCAGCAGGGAGGAAGACCAGGGAGTCCCAGGCTGCGGCCAGAGAAGATAA
TGACCCAAATAGAGATGAGGTCCCAAGAGCCCAACTTCCCACCCACAGGCCAGGACTGCCTCGCCTGTCT
GTGCGTCGTGGAGAATTCAGCAGTAGCGACCCCAACATCAGAGCTCCCCAACTTCCGGGAACTTCAGAGC
CCTCGGCCTACAGCCCGGGAGGCCTCGTGCCCAGACGCCATGCACCCTCCGGTAACCAGCAGCCGCCTGT
CCATCCCCCAAGACCGGAAAGGCAGCAGCAGCCCCCGGGAGCCCAGGGCTGTCCTCGGTGCATCTGGCTG
CAGAGGGAAATTGAGGACCTTACACAGCAGCTAGCGGCCATGCAGTTCCTCACTGACAAGTTCCAGGACC
TTTGA

Translation (514 aa):
MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELI
EQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPS
GRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADES
SDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELED
SPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPE
PATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS
VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCPRCIWL
QREIEDLTQQLAAMQFLTDKFQDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH