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Report for CCDS30938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30938.1 Public Homo sapiens 1 CENPL 24 110 108 CCDS HistoryNCBI Gene:91687Re-query CCDS DB by CCDS ID:30938.1Re-query CCDS DB by GeneID:91687See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345664.10 ENSP00000323543.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345664.10Link to Ensembl Protein Viewer:ENSP00000323543.7Re-query CCDS DB by Nucleotide ID:ENST00000345664Re-query CCDS DB by Protein ID:ENSP00000323543
Original member Current member EBI ENST00000367710.7 ENSP00000356683.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367710.7Link to Ensembl Protein Viewer:ENSP00000356683.3Re-query CCDS DB by Nucleotide ID:ENST00000367710Re-query CCDS DB by Protein ID:ENSP00000356683
Original member Current member EBI ENST00000682279.1 ENSP00000507473.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682279.1Link to Ensembl Protein Viewer:ENSP00000507473.1Re-query CCDS DB by Nucleotide ID:ENST00000682279Re-query CCDS DB by Protein ID:ENSP00000507473
Original member Current member NCBI NM_001171182.2 NP_001164653.1 Accepted alive Link to Nucleotide Sequence:NM_001171182.2Link to Protein Sequence:NP_001164653.1Re-query CCDS DB by Nucleotide ID:NM_001171182Re-query CCDS DB by Protein ID:NP_001164653Link to BLAST:NP_001164653.1
Original member Current member NCBI NM_001387287.1 NP_001374216.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387287.1Link to Protein Sequence:NP_001374216.1Re-query CCDS DB by Nucleotide ID:NM_001387287Re-query CCDS DB by Protein ID:NP_001374216Link to BLAST:NP_001374216.1
Original member Current member NCBI NM_001387288.1 NP_001374217.1 Accepted alive Link to Nucleotide Sequence:NM_001387288.1Link to Protein Sequence:NP_001374217.1Re-query CCDS DB by Nucleotide ID:NM_001387288Re-query CCDS DB by Protein ID:NP_001374217Link to BLAST:NP_001374217.1
Original member Current member NCBI NM_001387289.1 NP_001374218.1 Accepted alive Link to Nucleotide Sequence:NM_001387289.1Link to Protein Sequence:NP_001374218.1Re-query CCDS DB by Nucleotide ID:NM_001387289Re-query CCDS DB by Protein ID:NP_001374218Link to BLAST:NP_001374218.1
Original member Current member NCBI NM_001387290.1 NP_001374219.1 Accepted alive Link to Nucleotide Sequence:NM_001387290.1Link to Protein Sequence:NP_001374219.1Re-query CCDS DB by Nucleotide ID:NM_001387290Re-query CCDS DB by Protein ID:NP_001374219Link to BLAST:NP_001374219.1
Original member Current member NCBI NM_033319.4 NP_201576.1 Accepted alive Link to Nucleotide Sequence:NM_033319.4Link to Protein Sequence:NP_201576.1Re-query CCDS DB by Nucleotide ID:NM_033319Re-query CCDS DB by Protein ID:NP_201576Link to BLAST:NP_201576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164653.1 344 Q8N0S6-1 344 100% 0 0
NP_001374216.1 344 Q8N0S6-1 344 100% 0 0
NP_001374217.1 344 Q8N0S6-1 344 100% 0 0
NP_001374218.1 344 Q8N0S6-1 344 100% 0 0
NP_001374219.1 344 Q8N0S6-1 344 100% 0 0
NP_201576.1 344 Q8N0S6-1 344 100% 0 0

Chromosomal Locations for CCDS 30938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173800448 173800519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173802963 173803505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173807267 173807518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173811132 173811299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGATTCTTACAGTGCACCAGAGTCAACTCCTAGTGCATCCTCAAGACCTGAAGATTACTTTATAGGTG
CCACTCCTCTGCAGAAACGATTAGAATCGGTCAGGAAGCAGAGTTCATTTATCCTGACTCCACCTCGAAG
GAAAATTCCCCAGTGTTCGCAGTTGCAGGAAGATGTTGACCCTCAAAAGGTTGCATTCCTTCTGCATAAA
CAGTGGACTTTATATAGTTTAACTCCCTTATATAAATTCTCCTATAGTAATCTCAAAGAGTATTCTAGAC
TTCTCAATGCTTTTATTGTTGCTGAAAAGCAAAAAGGACTTGCTGTGGAAGTGGGAGAAGACTTCAACAT
CAAAGTGATTTTTTCTACTCTCCTAGGAATGAAAGGAACACAAAGGGACCCGGAAGCATTTCTTGTCCAG
ATTGTGTCAAAATCTCAATTGCCATCTGAGAATAGAGAAGGTAAAGTGCTGTGGACTGGCTGGTTCTGCT
GTGTATTTGGAGACAGTCTTCTGGAGACTGTTTCAGAAGATTTCACCTGTCTGCCCTTATTCCTTGCAAA
TGGAGCAGAGTCTAACACAGCAATAATTGGAACTTGGTTTCAGAAAACCTTTGACTGTTATTTCAGTCCT
TTAGCAATCAATGCATTTAATCTTTCCTGGATGGCTGCCATGTGGACTGCATGCAAAATGGACCATTATG
TGGCTACTACTGAATTTCTTTGGTCTGTACCCTGTAGCCCTCAAAGTCTGGACATTTCTTTCGCAATACA
TCCAGAGGATGCAAAAGCTCTATGGGACAGTGTCCACAAAACACCTGGGGAGGTTACCCAGGAAGAAGTT
GACCTATTCATGGATTGCCTTTATTCACATTTCCATAGACATTTCAAAATTCATTTATCAGCCACAAGAT
TAGTTCGTGTTTCAACATCTGTAGCTTCAGCACATACTGATGGAAAAATAAAGATTCTGTGTCATAAATA
CCTTATTGGAGTGTTAGCATATTTGACAGAACTGGCAATTTTTCAAATTGAGTGA

Translation (344 aa):
MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHK
QWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQ
IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSP
LAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEV
DLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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