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Report for CCDS35437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35437.1 Public Homo sapiens X TREX2 24 110 108 CCDS HistoryNCBI Gene:11219Re-query CCDS DB by CCDS ID:35437.1Re-query CCDS DB by GeneID:11219See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35437.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330912.7 ENSP00000333441.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330912.7Link to Ensembl Protein Viewer:ENSP00000333441.2Re-query CCDS DB by Nucleotide ID:ENST00000330912Re-query CCDS DB by Protein ID:ENSP00000333441
Original member Current member EBI ENST00000338525.7 ENSP00000345218.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338525.7Link to Ensembl Protein Viewer:ENSP00000345218.2Re-query CCDS DB by Nucleotide ID:ENST00000338525Re-query CCDS DB by Protein ID:ENSP00000345218
Original member Current member EBI ENST00000370231.3 ENSP00000359251.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370231.3Link to Ensembl Protein Viewer:ENSP00000359251.2Re-query CCDS DB by Nucleotide ID:ENST00000370231Re-query CCDS DB by Protein ID:ENSP00000359251
Original member Current member EBI ENST00000393862.7 ENSP00000377442.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393862.7Link to Ensembl Protein Viewer:ENSP00000377442.2Re-query CCDS DB by Nucleotide ID:ENST00000393862Re-query CCDS DB by Protein ID:ENSP00000377442
Original member Current member NCBI NM_080701.4 NP_542432.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080701.4Link to Protein Sequence:NP_542432.2Re-query CCDS DB by Nucleotide ID:NM_080701Re-query CCDS DB by Protein ID:NP_542432Link to BLAST:NP_542432.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542432.2 236 Q9BQ50-2 236 100% 0 0

Chromosomal Locations for CCDS 35437.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153444720 153445430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTCCGAGGCACCCCGGGCCGAGACCTTTGTCTTCCTGGACCTGGAAGCCACTGGGCTCCCCAGTGTGG
AGCCCGAGATTGCCGAGCTGTCCCTCTTTGCTGTCCACCGCTCCTCCCTGGAGAACCCGGAGCACGACGA
GTCTGGTGCCCTAGTATTGCCCCGGGTCCTGGACAAGCTCACGCTGTGCATGTGCCCGGAGCGCCCCTTC
ACTGCCAAGGCCAGCGAGATCACCGGCCTGAGCAGTGAGGGCCTGGCGCGATGCCGGAAGGCTGGCTTTG
ATGGCGCCGTGGTGCGGACGCTGCAGGCCTTCCTGAGCCGCCAGGCAGGGCCCATCTGCCTTGTGGCCCA
CAATGGCTTTGATTATGATTTCCCCCTGCTGTGTGCCGAGCTGCGGCGCCTGGGTGCCCGCCTGCCCCGG
GACACTGTCTGCCTGGACACGCTGCCGGCCCTGCGGGGCCTGGACCGCGCCCACAGCCACGGCACCCGGG
CCCGGGGCCGCCAGGGTTACAGCCTCGGCAGCCTCTTCCACCGCTACTTCCGGGCAGAGCCAAGCGCAGC
CCACTCAGCCGAGGGCGACGTGCACACCCTGCTCCTGATCTTCCTGCACCGCGCCGCAGAGCTGCTCGCC
TGGGCCGATGAGCAGGCCCGTGGGTGGGCCCACATCGAGCCCATGTACTTGCCGCCTGATGACCCCAGCC
TGGAGGCCTGA

Translation (236 aa):
MSEAPRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPF
TAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPR
DTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLA
WADEQARGWAHIEPMYLPPDDPSLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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