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Report for CCDS9703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9703.1 Public Homo sapiens 14 TRIM9 24 110 108 CCDS HistoryNCBI Gene:114088Re-query CCDS DB by CCDS ID:9703.1Re-query CCDS DB by GeneID:114088See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9703.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298355.7 ENSP00000298355.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298355.7Link to Ensembl Protein Viewer:ENSP00000298355.3Re-query CCDS DB by Nucleotide ID:ENST00000298355Re-query CCDS DB by Protein ID:ENSP00000298355
Original member Current member NCBI NM_015163.6 NP_055978.4 Accepted alive Link to Nucleotide Sequence:NM_015163.6Link to Protein Sequence:NP_055978.4Re-query CCDS DB by Nucleotide ID:NM_015163Re-query CCDS DB by Protein ID:NP_055978Link to BLAST:NP_055978.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055978.4 710 Q9C026-1 710 100% 0 0

Chromosomal Locations for CCDS 9703.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50977291 50977353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50979387 50979549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50981800 50982103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50998050 50998188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51000683 51000840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51009080 51009233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51010384 51010494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51022835 51022957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51025265 51025360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51094118 51094939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGAGGAGATGGAAGAGGAGTTGAAATGCCCCGTGTGCGGCTCCTTCTATCGGGAGCCCATCATCCTGC
CCTGCTCTCACAATTTGTGTCAGGCGTGCGCCCGCAACATCCTGGTGCAGACCCCAGAGTCTGAATCCCC
CCAGAGCCATCGGGCCGCGGGCTCCGGGGTCTCCGACTATGACTATCTGGACCTGGACAAGATGAGCCTA
TACAGCGAGGCGGACAGCGGCTATGGCTCCTACGGGGGGTTCGCCAGCGCCCCCACTACCCCGTGCCAGA
AGTCCCCCAACGGCGTCCGCGTGTTTCCCCCGGCTATGCCGCCACCGGCCACCCACTTGTCACCGGCCCT
GGCCCCGGTGCCCCGCAACTCCTGTATCACCTGCCCCCAGTGTCACCGCAGCCTCATCCTGGATGACCGG
GGGCTCCGCGGCTTCCCCAAGAATCGCGTACTGGAAGGGGTAATTGACCGCTACCAGCAGAGCAAAGCCG
CGGCCCTCAAGTGCCAGCTCTGCGAGAAGGCGCCCAAGGAAGCCACCGTCATGTGCGAACAGTGCGATGT
CTTCTACTGCGATCCGTGCCGCCTGCGCTGCCACCCGCCCCGGGGGCCCCTAGCCAAGCACCGCCTGGTG
CCCCCGGCCCAGGGTCGTGTGAGCCGGAGGCTGAGCCCACGCAAGGTCTCCACCTGCACAGACCACGAGC
TGGAGAACCACAGCATGTACTGCGTGCAATGCAAGATGCCCGTGTGCTACCAGTGCTTGGAGGAGGGCAA
ACACTCCAGCCACGAAGTCAAGGCTCTGGGGGCCATGTGGAAACTACATAAGAGCCAGCTCTCCCAGGCG
CTGAACGGACTGTCAGACAGGGCCAAAGAAGCCAAGGAGTTTCTGGTACAGCTGCGCAACATGGTCCAGC
AGATCCAGGAGAACAGTGTGGAGTTTGAAGCCTGTCTGGTGGCCCAATGTGATGCCCTCATCGATGCCCT
CAACAGAAGAAAAGCCCAGCTGCTGGCCCGCGTCAACAAGGAGCATGAGCACAAGCTGAAGGTGGTTCGA
GATCAGATCTCTCACTGCACAGTGAAATTGCGCCAGACCACAGGTCTCATGGAGTACTGCTTGGAGGTGA
TTAAGGAAAATGATCCTAGTGGTTTTTTGCAGATTTCTGACGCCCTCATAAGAAGAGTGCACCTGACTGA
GGATCAGTGGGGTAAAGGCACACTCACTCCAAGGATGACCACGGACTTTGACTTGAGTCTGGACAACAGC
CCTCTGCTGCAATCCATCCACCAGCTGGATTTCGTGCAAGTGAAAGCTTCCTCTCCAGTCCCAGCAACCC
CTATCCTACAGCTGGAGGAATGTTGTACCCACAACAACAGCGCTACGTTGTCCTGGAAACAGCCACCTCT
GTCCACGGTGCCCGCCGATGGATACATTCTGGAGCTGGATGATGGCAACGGTGGTCAATTCCGGGAGGTG
TATGTGGGGAAGGAGACAATGTGCACTGTGGATGGTCTTCACTTCAACAGCACATACAACGCTCGGGTCA
AGGCCTTCAACAAAACAGGAGTCAGCCCGTACAGCAAGACCCTGGTCCTCCAAACGTCTGAGGTGGCCTG
GTTTGCTTTCGACCCTGGCTCGGCGCACTCGGACATCATCCTCTCCAATGACAACCTGACAGTGACCTGT
AGTAGCTATGATGACCGGGTGGTGCTAGGGAAGACTGGCTTCTCCAAGGGCATCCACTACTGGGAGCTCA
CGGTAGATCGCTATGACAACCACCCTGATCCTGCCTTTGGTGTGGCTCGCATGGACGTGATGAAGGATGT
GATGTTAGGAAAAGACGACAAAGCTTGGGCAATGTATGTGGACAATAACCGGAGCTGGTTCATGCACAAC
AACTCGCACACCAACAGAACTGAGGGAGGGATCACAAAAGGGGCCACAATTGGGGTCCTCCTCGACTTAA
ATAGAAAAAACTTGACATTTTTTATCAACGATGAACAACAAGGTCCCATAGCATTTGATAACGTGGAGGG
CCTCTTCTTCCCTGCGGTCAGCCTGAACAGGAACGTGCAGGTCACGCTGCACACCGGGCTCCCAGTCCCC
GACTTCTACTCCAGCAGAGCATCAATAGCCTAA

Translation (710 aa):
MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSL
YSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDR
GLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLV
PPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQA
LNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVR
DQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV
YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTC
SSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHN
NSHTNRTEGGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVP
DFYSSRASIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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