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Report for CCDS5542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5542.1 Public Homo sapiens 7 POM121 24 110 108 CCDS HistoryNCBI Gene:9883Re-query CCDS DB by CCDS ID:5542.1Re-query CCDS DB by GeneID:9883See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000627934.3 ENSP00000486504.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000627934.3Link to Ensembl Protein Viewer:ENSP00000486504.1Re-query CCDS DB by Nucleotide ID:ENST00000627934Re-query CCDS DB by Protein ID:ENSP00000486504
Original member Current member NCBI NM_001387685.1 NP_001374614.1 Accepted alive Link to Nucleotide Sequence:NM_001387685.1Link to Protein Sequence:NP_001374614.1Re-query CCDS DB by Nucleotide ID:NM_001387685Re-query CCDS DB by Protein ID:NP_001374614Link to BLAST:NP_001374614.1
Original member Current member NCBI NM_001387686.1 NP_001374615.1 Accepted alive Link to Nucleotide Sequence:NM_001387686.1Link to Protein Sequence:NP_001374615.1Re-query CCDS DB by Nucleotide ID:NM_001387686Re-query CCDS DB by Protein ID:NP_001374615Link to BLAST:NP_001374615.1
Original member Current member NCBI NM_001387687.1 NP_001374616.1 Accepted alive Link to Nucleotide Sequence:NM_001387687.1Link to Protein Sequence:NP_001374616.1Re-query CCDS DB by Nucleotide ID:NM_001387687Re-query CCDS DB by Protein ID:NP_001374616Link to BLAST:NP_001374616.1
Original member Current member NCBI NM_001387688.1 NP_001374617.1 Accepted alive Link to Nucleotide Sequence:NM_001387688.1Link to Protein Sequence:NP_001374617.1Re-query CCDS DB by Nucleotide ID:NM_001387688Re-query CCDS DB by Protein ID:NP_001374617Link to BLAST:NP_001374617.1
Original member Current member NCBI NM_001387689.1 NP_001374618.1 Accepted alive Link to Nucleotide Sequence:NM_001387689.1Link to Protein Sequence:NP_001374618.1Re-query CCDS DB by Nucleotide ID:NM_001387689Re-query CCDS DB by Protein ID:NP_001374618Link to BLAST:NP_001374618.1
Original member Current member NCBI NM_001387695.1 NP_001374624.1 Accepted alive Link to Nucleotide Sequence:NM_001387695.1Link to Protein Sequence:NP_001374624.1Re-query CCDS DB by Nucleotide ID:NM_001387695Re-query CCDS DB by Protein ID:NP_001374624Link to BLAST:NP_001374624.1
Original member Current member NCBI NM_001387696.1 NP_001374625.1 Accepted alive Link to Nucleotide Sequence:NM_001387696.1Link to Protein Sequence:NP_001374625.1Re-query CCDS DB by Nucleotide ID:NM_001387696Re-query CCDS DB by Protein ID:NP_001374625Link to BLAST:NP_001374625.1
Original member Current member NCBI NM_001387697.1 NP_001374626.1 Accepted alive Link to Nucleotide Sequence:NM_001387697.1Link to Protein Sequence:NP_001374626.1Re-query CCDS DB by Nucleotide ID:NM_001387697Re-query CCDS DB by Protein ID:NP_001374626Link to BLAST:NP_001374626.1
Original member Current member NCBI NM_001387698.1 NP_001374627.1 Accepted alive Link to Nucleotide Sequence:NM_001387698.1Link to Protein Sequence:NP_001374627.1Re-query CCDS DB by Nucleotide ID:NM_001387698Re-query CCDS DB by Protein ID:NP_001374627Link to BLAST:NP_001374627.1
Original member Current member NCBI NM_001387699.1 NP_001374628.1 Accepted alive Link to Nucleotide Sequence:NM_001387699.1Link to Protein Sequence:NP_001374628.1Re-query CCDS DB by Nucleotide ID:NM_001387699Re-query CCDS DB by Protein ID:NP_001374628Link to BLAST:NP_001374628.1
Original member Current member NCBI NM_001387700.1 NP_001374629.1 Accepted alive Link to Nucleotide Sequence:NM_001387700.1Link to Protein Sequence:NP_001374629.1Re-query CCDS DB by Nucleotide ID:NM_001387700Re-query CCDS DB by Protein ID:NP_001374629Link to BLAST:NP_001374629.1
Original member Current member NCBI NM_172020.5 NP_742017.1 Accepted alive Link to Nucleotide Sequence:NM_172020.5Link to Protein Sequence:NP_742017.1Re-query CCDS DB by Nucleotide ID:NM_172020Re-query CCDS DB by Protein ID:NP_742017Link to BLAST:NP_742017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374614.1 984 Q96HA1-2 984 100% 0 0
NP_001374615.1 984 Q96HA1-2 984 100% 0 0
NP_001374616.1 984 Q96HA1-2 984 100% 0 0
NP_001374617.1 984 Q96HA1-2 984 100% 0 0
NP_001374618.1 984 Q96HA1-2 984 100% 0 0
NP_001374624.1 984 Q96HA1-2 984 100% 0 0
NP_001374625.1 984 Q96HA1-2 984 100% 0 0
NP_001374626.1 984 Q96HA1-2 984 100% 0 0
NP_001374627.1 984 Q96HA1-2 984 100% 0 0
NP_001374628.1 984 Q96HA1-2 984 100% 0 0
NP_001374629.1 984 Q96HA1-2 984 100% 0 0
NP_742017.1 984 Q96HA1-2 984 100% 0 0

Chromosomal Locations for CCDS 5542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 72926413 72926477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72926802 72926963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72928385 72928465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72929940 72930111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72938590 72938681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72939336 72939409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72939847 72939968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72940414 72940516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72940817 72940993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72941837 72943522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72945586 72945708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72946137 72946234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2955 nt):
ATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATTTTCGCGTTCTGCGATACCAG
AGCAGATAATCAGCTCAACACTGTCCTCACCATCAAGTAACGCCCCAGACCCATGTGCAAAGGAGACAGT
ACTGAGTGCCCTCAAAGAGAAGGAGAAGAAAAGGACAGTGGAGGAAGAAGACCAAATATTCCTTGATGGC
CAGGAAAATAAAAGAAGGCGCCATGATAGCAGTGGCAGTGGACATTCAGCATTTGAGCCCCTGGTGGCCA
ATGGAGTCCCCGCTTCTTTTGTGCCTAAGCCTGGGTCTCTGAAGAGAGGCCTCAATTCTCAGAGCTCAGA
TGACCACTTGAATAAGAGATCCCGAAGCTCTTCCATGAGCTCCTTGACAGGCGCTTACGCAAGTGGCATC
CCTAGCTCCAGCCGCAATGCCATTACCAGTTCCTACAGCTCCACTCGAGGCATCTCACAGCTCTGGAAGA
GAAATGGCCCCAGTTCATCACCCTTCTCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCCAGC
AAAGAAAATAAGAGAAGAGGAGCTGTGTCATCATTCCAGTTCTTCAACTCCATTGGCAGCAGACAGGGAG
TCCCAGGGAGAAAAGGCTGCAGATACAACCCCAAGGAAGAAACAAAACTCGAATTCTCAGTCTACACCTG
GCAGCTCTGGGCAGCGTAAGCGGAAAGTTCAGCTGCTGCCTTCTCGGCGAGGGGAACAGCTGACCTTGCC
TCCACCTCCCCAGCTTGGCTATTCGATCACTGCCGAGGACCTAGACTTAGAGAAGAAGGCTTCATTACAG
TGGTTCAACCAGGCCTTGGAGGACAAGAGCGATGCTGCCTCGAACTCTGTCACTGAGACCCCACCTATCA
CTCAGCCTTCATTTACCTTTACCCTGCCTGCTGCTGCACCTGCCTCCCCACCCACCTCCCTCCTGGCCCC
AAGCACCAACCCACTGTTAGAGAGCTTGAAGAAGATGCAGACTCCCCCGAGCCTGCCACCCTGCCCAGAA
TCTGCTGGAGCAGCAACCACTGAGGCCCTCTCACCTCCAAAGACACCCAGCCTCCTACCCCCGCTGGGTT
TATCACAGTCAGGGCCGCCAGGGCTGCTCCCCAGCCCCTCCTTTGACTCCAAACCCCCGACCACTTTGCT
GGGGCTGATCCCTGCTCCATCCATGGTACCAGCCACTGACACCAAGGCACCTCCAACCCTTCAGGCAGAG
ACGGCTACCAAACCCCAAGCCACATCTGCCCCGTCCCCCGCCCCCAAGCAAAGCTTCCTGTTTGGAACAC
AGAACACCTCACCTTCCAGCCCTGCCGCCCCTGCTGCATCTTCAGCACCTCCCATGTTCAAGCCCATTTT
CACGGCTCCACCCAAGAGTGAGAAGGAAGGCCCCACACCGCCTGGCCCTTCAGTCACAGCCACAGCGCCC
TCCAGCTCCTCCCTCCCCACGACCACCAGCACCACAGCCCCGACCTTCCAGCCTGTCTTTAGCAGCATGG
GGCCACCTGCATCTGTGCCCTTGCCTGCTCCCTTCTTCAAGCAGACAACTACTCCCGCCACTGCTCCCAC
CACAACTGCCCCGCTCTTCACTGGCCTGGCCAGCGCCACCTCTGCTGTGGCTCCCATCACCTCTGCCAGT
CCATCCACAGACTCTGCTTCGAAGCCTGCGTTTGGCTTTGGCATAAACAGTGTGAGCAGCAGCAGTGTGA
GTACCACGACCAGCACCGCCACTGCCGCCTCACAGCCTTTCCTCTTCGGGGCGCCCCAGGCCTCTGCTGC
CAGCTTCACCCCGGCCATGGGCTCCATATTCCAGTTTGGCAAACCTCCTGCCTTGCCCACAACCACCACA
GTCACCACCTTCAGCCAGTCCCTGCACACTGCCGTGCCAACGGCCACCAGCAGCAGCGCTGCCGACTTTA
GTGGTTTTGGCAGCACCCTCGCCACCTCCGCCCCGGCCACCAGCAGCCAGCCCACTCTGACGTTCAGTAA
CACGAGCACCCCCACGTTCAACATTCCCTTTGGCTCAAGCGCCAAGTCCCCGCTCCCATCATATCCGGGA
GCCAACCCCCAGCCCGCATTTGGGGCCGCTGAGGGGCAGCCACCGGGGGCCGCCAAGCCGGCCCTTGCCC
CCAGCTTTGGCAGCTCTTTCACTTTTGGAAACTCTGCAGCCCCGGCTGCTGCACCCACACCTGCACCTCC
GTCCATGATCAAGGTCGTGCCTGCGTACGTGCCTACGCCCATCCATCCTATCTTTGGCGGTGCCACGCAC
TCGGCGTTTGGGTTGAAAGCCACGGCTTCGGCCTTCGGCGCTCCCGCCAGCTCACAGCCCGCCTTTGGCG
GCTCCACTGCTGTCTTCTTCGGTGCAGCCACCAGCTCCGGCTTTGGAGCCACCACCCAGACCGCCAGCAG
CGGGAGCAGCAGCTCGGTGTTTGGCAGCACAACACCATCACCCTTCACGTTTGGGGGTTCGGCAGCCCCC
GCTGGCAGTGGGAGCTTTGGGATCAATGTGGCCACCCCAGGCTCCAGCACCACCACCGGAGCTTTCAGCT
TTGGAGCAGGACAGAGTGGGAGCACAGCCACCTCCACCCCCTTCGCAGGGGGCTTAGGTCAGAACGCCCT
GGGCACCACCGGCCAGAGCACACCGTTTGCCTTCAACGTGAGCAGCACAACTGAGAGCAAACCTGTGTTT
GGAGGCACCGCCACCCCCACCTTTGGTCTGAACACCCCTGCGCCTGGAGTGGGCACATCAGGCAGCAGCC
TCTCCTTTGGGGCATCCTCAGCACCCGCCCAAGGCTTTGTTGGTGTTGCACCTTTCGGATCGGCGGCCCT
TTCATTTTCCATTGGTGCGGGATCCAAGACCCCAGGGGCTCGACAGCGACTGCAGGCCCGAAGGCAGCAC
ACCCGCAAAAAGTAG

Translation (984 aa):
MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTVEEEDQIFLDG
QENKRRRHDSSGSGHSAFEPLVANGVPASFVPKPGSLKRGLNSQSSDDHLNKRSRSSSMSSLTGAYASGI
PSSSRNAITSSYSSTRGISQLWKRNGPSSSPFSSPASSRSQTPERPAKKIREEELCHHSSSSTPLAADRE
SQGEKAADTTPRKKQNSNSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLDLEKKASLQ
WFNQALEDKSDAASNSVTETPPITQPSFTFTLPAAAPASPPTSLLAPSTNPLLESLKKMQTPPSLPPCPE
SAGAATTEALSPPKTPSLLPPLGLSQSGPPGLLPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPTLQAE
TATKPQATSAPSPAPKQSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPKSEKEGPTPPGPSVTATAP
SSSSLPTTTSTTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTTTAPLFTGLASATSAVAPITSAS
PSTDSASKPAFGFGINSVSSSSVSTTTSTATAASQPFLFGAPQASAASFTPAMGSIFQFGKPPALPTTTT
VTTFSQSLHTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTPTFNIPFGSSAKSPLPSYPG
ANPQPAFGAAEGQPPGAAKPALAPSFGSSFTFGNSAAPAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATH
SAFGLKATASAFGAPASSQPAFGGSTAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGSAAP
AGSGSFGINVATPGSSTTTGAFSFGAGQSGSTATSTPFAGGLGQNALGTTGQSTPFAFNVSSTTESKPVF
GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIGAGSKTPGARQRLQARRQH
TRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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