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Report for CCDS6237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6237.1 Public Homo sapiens 8 CA1 24 110 108 CCDS HistoryNCBI Gene:759Re-query CCDS DB by CCDS ID:6237.1Re-query CCDS DB by GeneID:759See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6237.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431316.3 ENSP00000392338.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431316.3Link to Ensembl Protein Viewer:ENSP00000392338.1Re-query CCDS DB by Nucleotide ID:ENST00000431316Re-query CCDS DB by Protein ID:ENSP00000392338
Original member Current member EBI ENST00000523022.6 ENSP00000429798.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000523022.6Link to Ensembl Protein Viewer:ENSP00000429798.1Re-query CCDS DB by Nucleotide ID:ENST00000523022Re-query CCDS DB by Protein ID:ENSP00000429798
Original member Current member EBI ENST00000523953.5 ENSP00000430656.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523953.5Link to Ensembl Protein Viewer:ENSP00000430656.1Re-query CCDS DB by Nucleotide ID:ENST00000523953Re-query CCDS DB by Protein ID:ENSP00000430656
Original member Current member EBI ENST00000542576.5 ENSP00000443517.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542576.5Link to Ensembl Protein Viewer:ENSP00000443517.1Re-query CCDS DB by Nucleotide ID:ENST00000542576Re-query CCDS DB by Protein ID:ENSP00000443517
Original member Current member NCBI NM_001128829.4 NP_001122301.1 Accepted alive Link to Nucleotide Sequence:NM_001128829.4Link to Protein Sequence:NP_001122301.1Re-query CCDS DB by Nucleotide ID:NM_001128829Re-query CCDS DB by Protein ID:NP_001122301Link to BLAST:NP_001122301.1
Original member Current member NCBI NM_001128830.4 NP_001122302.1 Accepted alive Link to Nucleotide Sequence:NM_001128830.4Link to Protein Sequence:NP_001122302.1Re-query CCDS DB by Nucleotide ID:NM_001128830Re-query CCDS DB by Protein ID:NP_001122302Link to BLAST:NP_001122302.1
Original member Current member NCBI NM_001128831.4 NP_001122303.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128831.4Link to Protein Sequence:NP_001122303.1Re-query CCDS DB by Nucleotide ID:NM_001128831Re-query CCDS DB by Protein ID:NP_001122303Link to BLAST:NP_001122303.1
Original member Current member NCBI NM_001164830.2 NP_001158302.1 Accepted alive Link to Nucleotide Sequence:NM_001164830.2Link to Protein Sequence:NP_001158302.1Re-query CCDS DB by Nucleotide ID:NM_001164830Re-query CCDS DB by Protein ID:NP_001158302Link to BLAST:NP_001158302.1
Original member Current member NCBI NM_001738.5 NP_001729.1 Accepted alive Link to Nucleotide Sequence:NM_001738.5Link to Protein Sequence:NP_001729.1Re-query CCDS DB by Nucleotide ID:NM_001738Re-query CCDS DB by Protein ID:NP_001729Link to BLAST:NP_001729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122301.1 261 P00915 261 100% 0 0
NP_001122302.1 261 P00915 261 100% 0 0
NP_001122303.1 261 P00915 261 100% 0 0
NP_001158302.1 261 P00915 261 100% 0 0
NP_001729.1 261 P00915 261 100% 0 0

Chromosomal Locations for CCDS 6237.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85328560 85328676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85329689 85329844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85332490 85332552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85333525 85333620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85336945 85337063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85338252 85338449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85341599 85341635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCAAGTCCAGACTGGGGATATGATGACAAAAATGGTCCTGAACAATGGAGCAAGCTGTATCCCATTG
CCAATGGAAATAACCAGTCCCCTGTTGATATTAAAACCAGTGAAACCAAACATGACACCTCTCTGAAACC
TATTAGTGTCTCCTACAACCCAGCCACAGCCAAAGAAATTATCAATGTGGGGCATTCCTTCCATGTAAAT
TTTGAGGACAACGATAACCGATCAGTGCTGAAAGGTGGTCCTTTCTCTGACAGCTACAGGCTCTTTCAGT
TCCATTTTCACTGGGGCAGTACAAATGAGCATGGTTCAGAACATACAGTGGATGGAGTCAAATATTCTGC
CGAGCTTCACGTAGCTCACTGGAATTCTGCAAAGTACTCCAGCCTTGCTGAAGCTGCCTCAAAGGCTGAT
GGTTTGGCAGTTATTGGTGTTTTGATGAAGGTTGGTGAGGCCAACCCAAAGCTGCAGAAAGTACTTGATG
CCCTCCAAGCAATTAAAACCAAGGGCAAACGAGCCCCATTCACAAATTTTGACCCCTCTACTCTCCTTCC
TTCATCCCTGGATTTCTGGACCTACCCTGGCTCTCTGACTCATCCTCCTCTTTATGAGAGTGTAACTTGG
ATCATCTGTAAGGAGAGCATCAGTGTCAGCTCAGAGCAGCTGGCACAATTCCGCAGCCTTCTATCAAATG
TTGAAGGTGATAACGCTGTCCCCATGCAGCACAACAACCGCCCAACCCAACCTCTGAAGGGCAGAACAGT
GAGAGCTTCATTTTGA

Translation (261 aa):
MASPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVN
FEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKAD
GLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPSSLDFWTYPGSLTHPPLYESVTW
IICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRASF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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