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Report for CCDS1240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1240.1 Public Homo sapiens 1 UAP1 24 110 108 CCDS HistoryNCBI Gene:6675Re-query CCDS DB by CCDS ID:1240.1Re-query CCDS DB by GeneID:6675See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367926.9 ENSP00000356903.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367926.9Link to Ensembl Protein Viewer:ENSP00000356903.4Re-query CCDS DB by Nucleotide ID:ENST00000367926Re-query CCDS DB by Protein ID:ENSP00000356903
Original member Current member NCBI NM_001324113.2 NP_001311042.1 Accepted alive Link to Nucleotide Sequence:NM_001324113.2Link to Protein Sequence:NP_001311042.1Re-query CCDS DB by Nucleotide ID:NM_001324113Re-query CCDS DB by Protein ID:NP_001311042Link to BLAST:NP_001311042.1
Original member Current member NCBI NM_001324114.2 NP_001311043.1 Accepted alive Link to Nucleotide Sequence:NM_001324114.2Link to Protein Sequence:NP_001311043.1Re-query CCDS DB by Nucleotide ID:NM_001324114Re-query CCDS DB by Protein ID:NP_001311043Link to BLAST:NP_001311043.1
Original member Current member NCBI NM_001324115.3 NP_001311044.1 Accepted alive Link to Nucleotide Sequence:NM_001324115.3Link to Protein Sequence:NP_001311044.1Re-query CCDS DB by Nucleotide ID:NM_001324115Re-query CCDS DB by Protein ID:NP_001311044Link to BLAST:NP_001311044.1
Original member Current member NCBI NM_001399790.1 NP_001386719.1 Accepted alive Link to Nucleotide Sequence:NM_001399790.1Link to Protein Sequence:NP_001386719.1Re-query CCDS DB by Nucleotide ID:NM_001399790Re-query CCDS DB by Protein ID:NP_001386719Link to BLAST:NP_001386719.1
Original member Current member NCBI NM_003115.6 NP_003106.3 Accepted alive Link to Nucleotide Sequence:NM_003115.6Link to Protein Sequence:NP_003106.3Re-query CCDS DB by Nucleotide ID:NM_003115Re-query CCDS DB by Protein ID:NP_003106Link to BLAST:NP_003106.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311042.1 505 Q16222-2 505 100% 0 0
NP_001311043.1 505 Q16222-2 505 100% 0 0
NP_001311044.1 505 Q16222-2 505 100% 0 0
NP_001386719.1 505 Q16222-2 505 100% 0 0
NP_003106.3 505 Q16222-2 505 100% 0 0

Chromosomal Locations for CCDS 1240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162566069 162566348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162576777 162576981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162579428 162579603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162581287 162581459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162587475 162587668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162588693 162588833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162590323 162590511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162597792 162597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162599271 162599363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGAACATTAATGACCTCAAACTCACGTTGTCCAAAGCTGGGCAAGAGCACCTACTACGTTTCTGGAATG
AGCTTGAAGAAGCCCAACAGGTAGAACTTTATGCAGAGCTCCAGGCCATGAACTTTGAGGAGCTGAACTT
CTTTTTCCAAAAGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAAGAATGTGGATGCACGAATGGAA
CCTGTGCCTCGAGAGGTATTAGGCAGTGCTACAAGGGATCAAGATCAGCTCCAGGCCTGGGAAAGTGAAG
GACTTTTCCAGATTTCTCAGAATAAAGTAGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGACTCGG
CGTTGCATATCCTAAGGGGATGTATGATGTTGGTTTGCCATCCCGTAAGACACTTTTTCAGATTCAAGCA
GAGCGTATCCTGAAGCTACAGCAGGTTGCTGAAAAATATTATGGCAACAAATGCATTATTCCATGGTATA
TAATGACCAGTGGCAGAACAATGGAATCTACAAAGGAGTTCTTCACCAAGCACAAGTACTTTGGTTTAAA
AAAAGAGAATGTAATCTTTTTTCAGCAAGGAATGCTCCCCGCCATGAGTTTTGATGGGAAAATTATTTTG
GAAGAGAAGAACAAAGTTTCTATGGCTCCAGATGGGAATGGTGGTCTTTATCGGGCACTTGCAGCCCAGA
ATATTGTGGAGGATATGGAGCAAAGAGGCATTTGGAGCATTCATGTCTATTGTGTTGACAACATATTAGT
AAAAGTGGCAGACCCACGGTTCATTGGATTTTGCATTCAGAAAGGAGCAGACTGTGGAGCAAAGGTGGTA
GAGAAAACGAACCCTACAGAACCAGTTGGAGTGGTTTGCCGAGTGGATGGAGTTTACCAGGTGGTAGAAT
ATAGTGAGATTTCCCTGGCAACAGCTCAAAAACGAAGCTCAGACGGACGACTGCTGTTCAATGCGGGGAA
CATTGCCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTCAATGTTTATGAACCTCAGTTGCAG
CACCATGTGGCTCAAAAGAAGATTCCTTATGTGGATACCCAAGGACAGTTAATTAAGCCAGACAAACCCA
ATGGAATAAAGATGGAAAAATTTGTCTTTGACATCTTCCAGTTTGCAAAGAAGTTTGTGGTATATGAAGT
ATTGCGAGAAGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACT
GCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAA
ATGGCTCTCGCCTTCCAGCAATTCCCCGCTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTC
TCCTCTTATCTCCTATGCTGGAGAAGGATTAGAAAGTTATGTGGCAGATAAAGAATTCCATGCACCTCTA
ATCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGTATTTGA

Translation (505 aa):
MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARME
PVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA
ERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIIL
EEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVV
EKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQ
HHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTT
ARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL
IIDENGVHELVKNGI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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