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Report for CCDS45306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45306.1 Public Homo sapiens 15 SCAMP5 24 110 108 CCDS HistoryNCBI Gene:192683Re-query CCDS DB by CCDS ID:45306.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361900.10 ENSP00000355387.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361900.10Link to Ensembl Protein Viewer:ENSP00000355387.6Re-query CCDS DB by Nucleotide ID:ENST00000361900Re-query CCDS DB by Protein ID:ENSP00000355387
Original member Current member EBI ENST00000425597.8 ENSP00000406547.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425597.8Link to Ensembl Protein Viewer:ENSP00000406547.3Re-query CCDS DB by Nucleotide ID:ENST00000425597Re-query CCDS DB by Protein ID:ENSP00000406547
Original member Current member NCBI NM_001178111.2 NP_001171582.1 Accepted alive Link to Nucleotide Sequence:NM_001178111.2Link to Protein Sequence:NP_001171582.1Re-query CCDS DB by Nucleotide ID:NM_001178111Re-query CCDS DB by Protein ID:NP_001171582Link to BLAST:NP_001171582.1
Original member Current member NCBI NM_001178112.2 NP_001171583.1 Accepted alive Link to Nucleotide Sequence:NM_001178112.2Link to Protein Sequence:NP_001171583.1Re-query CCDS DB by Nucleotide ID:NM_001178112Re-query CCDS DB by Protein ID:NP_001171583Link to BLAST:NP_001171583.1
Original member Current member NCBI NM_138967.4 NP_620417.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138967.4Link to Protein Sequence:NP_620417.1Re-query CCDS DB by Nucleotide ID:NM_138967Re-query CCDS DB by Protein ID:NP_620417Link to BLAST:NP_620417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171582.1 235 Q8TAC9-1 235 100% 0 0
NP_001171583.1 235 Q8TAC9-1 235 100% 0 0
NP_620417.1 235 Q8TAC9-1 235 100% 0 0

Chromosomal Locations for CCDS 45306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75011840 75011846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75012677 75012805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75016593 75016749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75017870 75017971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75018418 75018535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75018789 75018983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGCAGAGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAG
ACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGTTGAA
CAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAAC
TTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTT
ACAAGGCCTTCAAGACTGACAGCTCCTTCAGTTTCATGGCATTCTTCTTTACCTTCATGGCTCAGTTGGT
CATCAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGCGTCTGCGGCTGGATTGCTACCATCTCCTTC
TTCGGAACGAACATTGGCTCGGCGGTGGTGATGCTAATTCCCACTGTCATGTTCACAGTGATGGCCGTCT
TTTCCTTCATCGCCCTCAGCATGGTTCATAAATTTTACCGGGGAAGTGGGGGGAGTTTCAGCAAAGCTCA
GGAGGAGTGGACCACAGGGGCCTGGAAGAATCCACATGTGCAGCAGGCAGCCCAGAACGCAGCCATGGGG
GCAGCCCAGGGTGCCATGAATCAGCCTCAGACTCAGTATTCCGCCACCCCCAATTACACGTACTCCAATG
AGATGTGA

Translation (235 aa):
MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATN
FGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISF
FGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMG
AAQGAMNQPQTQYSATPNYTYSNEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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