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Report for CCDS55500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55500.1 Public Homo sapiens X PABIR3 24 110 108 CCDS HistoryNCBI Gene:159091Re-query CCDS DB by CCDS ID:55500.1Re-query CCDS DB by GeneID:159091See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414371.6 ENSP00000402477.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414371.6Link to Ensembl Protein Viewer:ENSP00000402477.2Re-query CCDS DB by Nucleotide ID:ENST00000414371Re-query CCDS DB by Protein ID:ENSP00000402477
Original member Current member NCBI NM_001170780.3 NP_001164251.1 Accepted alive Link to Nucleotide Sequence:NM_001170780.3Link to Protein Sequence:NP_001164251.1Re-query CCDS DB by Nucleotide ID:NM_001170780Re-query CCDS DB by Protein ID:NP_001164251Link to BLAST:NP_001164251.1
Original member Current member NCBI NM_001388441.1 NP_001375370.1 Accepted alive Link to Nucleotide Sequence:NM_001388441.1Link to Protein Sequence:NP_001375370.1Re-query CCDS DB by Nucleotide ID:NM_001388441Re-query CCDS DB by Protein ID:NP_001375370Link to BLAST:NP_001375370.1
Original member Current member NCBI NM_001388442.1 NP_001375371.1 Accepted alive Link to Nucleotide Sequence:NM_001388442.1Link to Protein Sequence:NP_001375371.1Re-query CCDS DB by Nucleotide ID:NM_001388442Re-query CCDS DB by Protein ID:NP_001375371Link to BLAST:NP_001375371.1
Original member Current member NCBI NM_001388443.1 NP_001375372.1 Accepted alive Link to Nucleotide Sequence:NM_001388443.1Link to Protein Sequence:NP_001375372.1Re-query CCDS DB by Nucleotide ID:NM_001388443Re-query CCDS DB by Protein ID:NP_001375372Link to BLAST:NP_001375372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164251.1 115 Q6P4D5-3 115 100% 0 0
NP_001375370.1 115 Q6P4D5-3 115 100% 0 0
NP_001375371.1 115 Q6P4D5-3 115 100% 0 0
NP_001375372.1 115 Q6P4D5-3 115 100% 0 0

Chromosomal Locations for CCDS 55500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134804198 134804246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134807540 134807708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134814771 134814849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134821327 134821377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGCATATTTCCCTGGAACTGGAAGGACTGATCAAGAAACACAGCTAGACTTGTCCTTGTGTGGACGGG
AGCCGGAAAGCCTTGAGAACTTATTCCTCGACCCGGACATGGCACAGGAGAAAATGAAACTAGGTTTCAA
GTCGCTGCCGAGTTCCACTACCGCAGACGGCAACATTCTGAGAAGAGTCAACAGTGCCCCTTTGATCAAT
GGACTTGGTTTTAATTCACAGGTGTTGCAAGCTGACATGTTAAGAATTAGGACAAACAGAACAACATTTA
GGAATCGACGCTCTCTGGAAATTACTTCACCCACTTCTGTTGAACAGAAGCCCAAAGACCTCTTCTGA

Translation (115 aa):
MAYFPGTGRTDQETQLDLSLCGREPESLENLFLDPDMAQEKMKLGFKSLPSSTTADGNILRRVNSAPLIN
GLGFNSQVLQADMLRIRTNRTTFRNRRSLEITSPTSVEQKPKDLF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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