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Report for CCDS14778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14778.1 Public Homo sapiens Y AMELY 24 110 108 CCDS HistoryNCBI Gene:266Re-query CCDS DB by CCDS ID:14778.1Re-query CCDS DB by GeneID:266See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14778.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651267.2 ENSP00000498344.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651267.2Link to Ensembl Protein Viewer:ENSP00000498344.1Re-query CCDS DB by Nucleotide ID:ENST00000651267Re-query CCDS DB by Protein ID:ENSP00000498344
Original member Current member NCBI NM_001143.2 NP_001134.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143.2Link to Protein Sequence:NP_001134.1Re-query CCDS DB by Nucleotide ID:NM_001143Re-query CCDS DB by Protein ID:NP_001134Link to BLAST:NP_001134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001134.1 192 Q99218-1 192 100% 0 0

Chromosomal Locations for CCDS 14778.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 6866073 6866078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 6868037 6868462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 6868732 6868776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 6870006 6870053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 6872555 6872608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGGGACCTGGATTTTGTTTGCCTGCCTTGTGGGAGCAGCTTTTGCCATGCCTCTACCACCTCATCCTG
GGCACCCTGGTTATATCAACTTCAGCTATGAGGTGCTCACCCCTTTGAAGTGGTACCAGAGCATGATAAG
ACCACCATACTCTTCCTATGGTTACGAGCCCATGGGTGGATGGCTGCACCACCAAATCATCCCCGTGGTG
TCCCAACAGCACCCCCTGACTCACACCCTGCAGTCTCATCACCACATCCCAGTGGTGCCAGCTCAGCAGC
CCAGGGTCCGCCAGCAAGCACTGATGCCTGTTCCTGGCCAGCAATCCATGACTCCAACCCAACACCATCA
GCCAAACCTCCCTCTGCCTGCCCAGCAGCCCTTCCAGCCCCAGCCTGTTCAGCCACAGCCTCACCAGCCC
ATGCAGCCCCAGCCACCTGTGCAACCCATGCAGCCCCTGCTGCCACAGCCACCTCTGCCTCCAATGTTCC
CCCTGCGGCCCCTGCCCCCCATACTTCCTGATCTGCATCTGGAAGCTTGGCCAGCAACAGACAAGACCAA
GCAGGAGGAAGTGGATTAA

Translation (192 aa):
MGTWILFACLVGAAFAMPLPPHPGHPGYINFSYEVLTPLKWYQSMIRPPYSSYGYEPMGGWLHHQIIPVV
SQQHPLTHTLQSHHHIPVVPAQQPRVRQQALMPVPGQQSMTPTQHHQPNLPLPAQQPFQPQPVQPQPHQP
MQPQPPVQPMQPLLPQPPLPPMFPLRPLPPILPDLHLEAWPATDKTKQEEVD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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