NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55176.1 Public Homo sapiens 7 CTAGE4 24 110 108 CCDS HistoryNCBI Gene:100128553Re-query CCDS DB by CCDS ID:55176.1Re-query CCDS DB by GeneID:100128553See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486333.2 ENSP00000419539.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000486333.2Link to Ensembl Protein Viewer:ENSP00000419539.1Re-query CCDS DB by Nucleotide ID:ENST00000486333Re-query CCDS DB by Protein ID:ENSP00000419539
Original member Current member NCBI NM_198495.3 NP_940897.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198495.3Link to Protein Sequence:NP_940897.2Re-query CCDS DB by Nucleotide ID:NM_198495Re-query CCDS DB by Protein ID:NP_940897Link to BLAST:NP_940897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940897.2 777 Q8IX94 777 100% 0 0

Chromosomal Locations for CCDS 55176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144183504 144185837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGAGGAGCCTGGTGCTACCCCTCAGCCCTACCTGGGGCTGGTCCTGGAGGAGCTACGCAGAGTTGTGG
CAGCACTACCTGAGAGTATGAGACCAGATGAGAATCCTTATGGTTTTCCATCGGAACTGGTGGTATGTGC
AGCTGTTATTGGATTTTTTGTTGTTCTCCTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTT
TACGTGGGAAGAGAGCAAAAACTTGGTGCAACGCTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTG
AAAAGTTTAGCCTTATTCAAAAAGAGTATGAAGGCTATGAAGTAGAGTCATCTTTAGAGGATGCCAGCTT
TGAGAAGGCGGCAGCAGAAGAAGCACGAAGTTTGGAGGCAACCTGTGAAAAGCTGAACAGGTCCAATTCT
GAACTTGAGGATGAAATCCTCTGTCTAGAAAAAGACTTAAAAGAAGAGAAATCTAAACATTCTCAACAAG
ATGAATTGATGGCGGATATTTCAAAAAGTATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACA
AATAGCTGAAGCCAAAATCATCTGCAAGACATTTAAAATGAGTGAAGAACGACGGGCTATAGCAATAAAA
GATGCTTTGAATGAAAATTCTCAACTTCAGACAAGCCATAAACAGCTTTTTCAGCAAGAAGCTGAAGTAT
GGAAAGGAGAAGTGAGTGAACTTAATAAACAGAAAATAACATTTGAAGACTCCAAAGTGCACGCAGAACA
AGTTCTGAATGATAAAGAAAATCACATCAAGACCCTGACTGGACACTTGCCAATGATGAAAGATCAGGCT
GCTGTGCTTGAAGAAGACACAACGGATGATGATAACCTGGAATTAGAAGTGAACAGTCAATGGGAAAATG
GTGCTAACTTAGATGATCCTCTGAAAGGAGCTTTGAAGAAACTGATTCATGCTGCTAAGTTAAATGTTTC
TTTAAAAAGCTTAGAAGGAGAAAGAAACCACATTATTATTCAGTTATCTGAAGTGGACAAAACAAAGGAA
GAGCTTACAGAGCATATTAAAAATCTTCAGACTCAACAAGCATCTTTGCAATCAGAAAACATATATTTTG
AAAGTGAGAATCAGAAGCTTCAACAGAAACTTAAAATAATGACTGAATTCTATCAAGAAAATGAAATGAA
ACTCTACAGGAAATTAACAGTGGAGGAAAATTACCGAATAGAGGAAGAAGAGAAGCTTTCTAGAGTGGAA
GAAAAGATCAGCCGTGCCACTGAAGGGCTGGAGACCTATAGAAAGCTAGCCAAAGATCTTGAAGAAGAAT
TGGAGAGAACTGTTCATTTTTATCAAAAGCAGGTTATTTCCTACGAGAAAAGAGGACATGATAATTGGTT
GGCAGCTCGGACTGCTGAAAGAAACCTCAGTGATTTAAGGAAAGAAAATGCTCACAACAAACAAAAATTA
ACTGAAACAGAGTTGAAATTTGAACTTTTAGAAAAAGATCCTAATGCACTCGATGTTTCAAATACAGCAT
TTGGCAGAGAGCATTCCCCATGTAGTCCCTCACCATTGGGTCGGCCTTCATCTGAAACGAGAGCTTTTCC
CTCTCCTCAAACTTTGTTGGAGGATCCACTCAGACTCTCACCTGTGCTTCCAGGGGGAGGAGGAAGAGGC
CCAAGCAGCCCAGGGAATCCCCTGGACCATCAGATTACCAATGAAAGAGGAGAACCAAGCTATGACAGGT
TAATCGATCCTCACAGGGCTCCTTCTGACACTGGGTCCCTGTCATCTCCGGTGGAACAGGACCGTAGGAT
GATGTTTCCTCCACCAGGGCAATCATATCCTGATTCAACTCTTCCTCCACAAAGGGAAGACAGATTTTAT
TCTAATTCTGAAAGACTGTCTGGACCAGCAGAACCCAGAAGTTTTAAAATGACTTCTTTGGATAAAATGG
ATAGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATGCCAAAGATGATCTTGGTAATTTAAATGT
GCCTGATTCATCTCTCCCTGCTGAAAATGAAGCAACTGGCCCTGGCCTTATTCCTCCACCTCTTGCTCCA
ATCAGCGGTCCATTGTTTCCAGTGGATACAAGGGGCCCGTTCATGAGAAGAGGACCTCCTTTCCCCCCAC
CTCCTCCAGGAACCATGTTTGGAGCTTCTCGAGGTTATTTTCCACCAAGGGATTTCCCAGGTCCACCACA
TGCTCCATTTGCAATGAGAAACATCTATCCACCGAGGGGTTTACCTCCTTACCTTCATCCGAGACCTGGA
TTTTACCCCAACCCCACATTCTGA

Translation (777 aa):
MEEPGATPQPYLGLVLEELRRVVAALPESMRPDENPYGFPSELVVCAAVIGFFVVLLFLWRSFRSVRSRL
YVGREQKLGATLSGLIEEKCKLLEKFSLIQKEYEGYEVESSLEDASFEKAAAEEARSLEATCEKLNRSNS
ELEDEILCLEKDLKEEKSKHSQQDELMADISKSIQSLEDESKSLKSQIAEAKIICKTFKMSEERRAIAIK
DALNENSQLQTSHKQLFQQEAEVWKGEVSELNKQKITFEDSKVHAEQVLNDKENHIKTLTGHLPMMKDQA
AVLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGERNHIIIQLSEVDKTKE
ELTEHIKNLQTQQASLQSENIYFESENQKLQQKLKIMTEFYQENEMKLYRKLTVEENYRIEEEEKLSRVE
EKISRATEGLETYRKLAKDLEEELERTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENAHNKQKL
TETELKFELLEKDPNALDVSNTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRG
PSSPGNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPDSTLPPQREDRFY
SNSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRNDAKDDLGNLNVPDSSLPAENEATGPGLIPPPLAP
ISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGPPHAPFAMRNIYPPRGLPPYLHPRPG
FYPNPTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH