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Report for CCDS63622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63622.1 Public Homo sapiens 3 SHISA5 24 110 108 CCDS HistoryNCBI Gene:51246Re-query CCDS DB by CCDS ID:63622.1Re-query CCDS DB by GeneID:51246See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444115.5 ENSP00000407957.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444115.5Link to Ensembl Protein Viewer:ENSP00000407957.1Re-query CCDS DB by Nucleotide ID:ENST00000444115Re-query CCDS DB by Protein ID:ENSP00000407957
Original member Current member EBI ENST00000442747.5 ENSP00000408223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442747.5Link to Ensembl Protein Viewer:ENSP00000408223.1Re-query CCDS DB by Nucleotide ID:ENST00000442747Re-query CCDS DB by Protein ID:ENSP00000408223
Original member Current member EBI ENST00000619810.4 ENSP00000484992.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619810.4Link to Ensembl Protein Viewer:ENSP00000484992.1Re-query CCDS DB by Nucleotide ID:ENST00000619810Re-query CCDS DB by Protein ID:ENSP00000484992
Original member Current member NCBI NM_001272066.2 NP_001258995.1 Accepted alive Link to Nucleotide Sequence:NM_001272066.2Link to Protein Sequence:NP_001258995.1Re-query CCDS DB by Nucleotide ID:NM_001272066Re-query CCDS DB by Protein ID:NP_001258995Link to BLAST:NP_001258995.1
Original member Current member NCBI NM_001272067.2 NP_001258996.1 Accepted alive Link to Nucleotide Sequence:NM_001272067.2Link to Protein Sequence:NP_001258996.1Re-query CCDS DB by Nucleotide ID:NM_001272067Re-query CCDS DB by Protein ID:NP_001258996Link to BLAST:NP_001258996.1
Original member Current member NCBI NM_001272068.2 NP_001258997.1 Accepted alive Link to Nucleotide Sequence:NM_001272068.2Link to Protein Sequence:NP_001258997.1Re-query CCDS DB by Nucleotide ID:NM_001272068Re-query CCDS DB by Protein ID:NP_001258997Link to BLAST:NP_001258997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258995.1 209 Q8N114-2 209 100% 0 0
NP_001258996.1 209 Q8N114-2 209 100% 0 0
NP_001258997.1 209 Q8N114-2 209 100% 0 0

Chromosomal Locations for CCDS 63622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48469107 48469186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48469361 48469573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48469728 48469843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48479177 48479257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48501137 48501276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGCTTCCCGTGGACTCAGCCTCTTCCCCGAGTCCTGTCCAGATTTCTGCTGTGGTACCTGTGATGACC
AATACTGCTGCTCTGACGTGCTGAAGAAATTTGTGTGGAGCGAGGAAAGGTGTGCTGTGCCTGAGGCCAG
CGTGCCTGCCAGTGTAGAGCCGGTGGAGCAGCTGGGCTCGGCGCTGAGGTTTCGCCCTGGCTACAACGAC
CCCATGTCAGGGTTCGGAGCGACCTTGGCCGTTGGCCTGACCATCTTTGTGCTGTCTGTCGTCACTATCA
TCATCTGCTTCACCTGCTCCTGCTGCTGCCTTTACAAGACGTGCCGCCGACCACGTCCGGTTGTCACCAC
CACCACATCCACCACTGTGGTGCATGCCCCTTATCCTCAGCCTCCAAGTGTGCCGCCCAGCTACCCTGGA
CCAAGCTACCAGGGCTACCACACCATGCCGCCTCAGCCAGGGATGCCAGCAGCACCCTACCCAATGCAGT
ACCCACCACCTTACCCAGCCCAGCCCATGGGCCCACCGGCCTACCACGAGACCCTGGCTGGAGGAGCAGC
CGCGCCCTACCCCGCCAGCCAGCCTCCTTACAACCCGGCCTACATGGATGCCCCGAAGGCGGCCCTCTGA

Translation (209 aa):
MASRGLSLFPESCPDFCCGTCDDQYCCSDVLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYND
PMSGFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPG
PSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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