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Report for CCDS12789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12789.1 Public Homo sapiens 19 ATF5 24 110 108 CCDS HistoryNCBI Gene:22809Re-query CCDS DB by CCDS ID:12789.1Re-query CCDS DB by GeneID:22809See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423777.7 ENSP00000396954.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423777.7Link to Ensembl Protein Viewer:ENSP00000396954.1Re-query CCDS DB by Nucleotide ID:ENST00000423777Re-query CCDS DB by Protein ID:ENSP00000396954
Original member Current member EBI ENST00000595125.5 ENSP00000470633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595125.5Link to Ensembl Protein Viewer:ENSP00000470633.1Re-query CCDS DB by Nucleotide ID:ENST00000595125Re-query CCDS DB by Protein ID:ENSP00000470633
Original member Current member NCBI NM_001193646.2 NP_001180575.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193646.2Link to Protein Sequence:NP_001180575.1Re-query CCDS DB by Nucleotide ID:NM_001193646Re-query CCDS DB by Protein ID:NP_001180575Link to BLAST:NP_001180575.1
Original member Current member NCBI NM_001290746.2 NP_001277675.1 Accepted alive Link to Nucleotide Sequence:NM_001290746.2Link to Protein Sequence:NP_001277675.1Re-query CCDS DB by Nucleotide ID:NM_001290746Re-query CCDS DB by Protein ID:NP_001277675Link to BLAST:NP_001277675.1
Original member Current member NCBI NM_012068.6 NP_036200.2 Accepted alive Link to Nucleotide Sequence:NM_012068.6Link to Protein Sequence:NP_036200.2Re-query CCDS DB by Nucleotide ID:NM_012068Re-query CCDS DB by Protein ID:NP_036200Link to BLAST:NP_036200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180575.1 282 Q9Y2D1 282 100% 0 0
NP_001277675.1 282 Q9Y2D1 282 100% 0 0
NP_036200.2 282 Q9Y2D1 282 100% 0 0

Chromosomal Locations for CCDS 12789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49930851 49931028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49932422 49933092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGC
TCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCCCCTGGCTCCCTATGAGGTCCTTGGGGGAGCCCT
GGAGGGCGGGCTTCCAGTGGGGGGAGAGCCCCTGGCAGGTGATGGCTTCTCTGACTGGATGACTGAGCGA
GTTGATTTCACAGCTCTCCTCCCTCTGGAGCCTCCCTTACCCCCCGGCACCCTCCCCCAACCTTCCCCAA
CCCCACCTGACCTGGAAGCTATGGCCTCCCTCCTCAAGAAGGAGCTGGAACAGATGGAAGACTTCTTCCT
AGATGCCCCGCCCCTCCCACCACCCTCCCCGCCGCCACTACCACCACCACCACTACCACCAGCCCCCTCC
CTCCCCCTGTCCCTCCCCTCCTTTGACCTCCCCCAGCCCCCTGTCTTGGATACTCTGGACTTGCTGGCCA
TCTACTGCCGCAACGAGGCCGGGCAGGAGGAAGTGGGGATGCCGCCTCTGCCCCCGCCACAGCAGCCCCC
TCCTCCTTCTCCACCTCAACCTTCTCGCCTGGCCCCCTACCCACATCCTGCCACCACCCGAGGGGACCGC
AAGCAAAAGAAGAGAGACCAGAACAAGTCGGCGGCTCTGAGGTACCGCCAGCGGAAGCGGGCAGAGGGTG
AGGCCCTGGAGGGCGAGTGCCAGGGGCTGGAGGCACGGAATCGCGAGCTGAAGGAACGGGCAGAGTCCGT
GGAGCGCGAGATCCAGTACGTCAAGGACCTGCTCATCGAGGTTTACAAGGCCCGGAGCCAGAGGACCCGT
AGCTGCTAG

Translation (282 aa):
MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAGDGFSDWMTER
VDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAPPLPPPSPPPLPPPPLPPAPS
LPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPLPPPQQPPPPSPPQPSRLAPYPHPATTRGDR
KQKKRDQNKSAALRYRQRKRAEGEALEGECQGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTR
SC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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