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Report for CCDS82241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82241.1 Public Homo sapiens 18 SLC35G4 24 110 108 CCDS HistoryNCBI Gene:646000Re-query CCDS DB by CCDS ID:82241.1Re-query CCDS DB by GeneID:646000See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588001.2 ENSP00000490812.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588001.2Link to Ensembl Protein Viewer:ENSP00000490812.1Re-query CCDS DB by Nucleotide ID:ENST00000588001Re-query CCDS DB by Protein ID:ENSP00000490812
Original member Current member NCBI NM_001282300.2 NP_001269229.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282300.2Link to Protein Sequence:NP_001269229.1Re-query CCDS DB by Nucleotide ID:NM_001282300Re-query CCDS DB by Protein ID:NP_001269229Link to BLAST:NP_001269229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269229.1 338 P0C7Q5 338 100% 0 0

Chromosomal Locations for CCDS 82241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11609596 11610612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCTGGCAGTCACCCCTACTTCAACCTGCCTGACTCCACACACCCATCGCCGCCCTCCACTCCACCCA
GCCTCCACTGGCACCAGCGCTGCCAGCCCTCTGATGCCACCAATGGCCTGCTGGTGGCCCTGCTGGGTGG
GGGCCTGCCTGCTGGCTTCGTGGGCCCCCTTTCTCGTATGGCTTACCAGGCTTCCAACCTGCCCTCGCTG
GAGCTGGTCATCTGTCGATGCCTCTTCCACCTCCCTATTGCCCTGCTACTTAAACTGCGTGGCGACCCCC
TTCTGGGACCTCCTGACATCCGAGGCCGCACCTGCTTCTGTGCCCTGCTCAACGTCCTCAACATTGGATG
TGCCTATAGTGCGGTTCAGGTGGTGCCCACTGGCAATGCTGCCACTGTTCGCAAACATTCTTCCACCGTC
TGCTCCGCCATCCTCACCCTCTGCCTTGAGAGCCAGGTTCTCAGTGGCTACGACTGGTGTGGACTGTTGG
GCAGCATCCTAGGACTAATAATCATTGTGGGACCTGGACTCTGGACACTACAGGAGGGGACCACGGGTGT
CTACACCGGCCTGGGCTATGTGCAGGCTTTCCTGGGAGGACTGGCGCTGTCCCTGGGGCTTCTCGTCTAT
CGTTCTCTGCACTTTCCCTCCTGCCTCCCAACAGTGGCCTTCCTATCTGGCTTGGTGGGGCTGCTGGGCT
CTGTGCCAGGCCTCTTTGTGCTGCAGTCCCCCGTGTTGCCCAGTGACCTCCTGAGTTGGAGTTGTGTGGG
GGCAGTGGGGATCCTCACCTTGGTCTCCTTCACATGTGTGGGCTATGCGGTCACCAAGGCCCACCCTGCC
CTGGTGTGTGCTGTCCTGCATTCCGAGGTGGTGATGGCCCTTATACTGCAGTATTTTATGCTCCATGAGA
CTGTGGCACCTTCTGACATCATGGGGGCAGGGGTTGTGCTGGGCAGCATTGCCATCATTACAGCCCGGAA
CCTCATCTGTGAGAGGACAGGGAAGGTGGAGGAGTGA

Translation (338 aa):
MAGSHPYFNLPDSTHPSPPSTPPSLHWHQRCQPSDATNGLLVALLGGGLPAGFVGPLSRMAYQASNLPSL
ELVICRCLFHLPIALLLKLRGDPLLGPPDIRGRTCFCALLNVLNIGCAYSAVQVVPTGNAATVRKHSSTV
CSAILTLCLESQVLSGYDWCGLLGSILGLIIIVGPGLWTLQEGTTGVYTGLGYVQAFLGGLALSLGLLVY
RSLHFPSCLPTVAFLSGLVGLLGSVPGLFVLQSPVLPSDLLSWSCVGAVGILTLVSFTCVGYAVTKAHPA
LVCAVLHSEVVMALILQYFMLHETVAPSDIMGAGVVLGSIAIITARNLICERTGKVEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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