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Report for CCDS31819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31819.1 Public Homo sapiens 12 OR6C3 24 110 108 CCDS HistoryNCBI Gene:254786Re-query CCDS DB by CCDS ID:31819.1Re-query CCDS DB by GeneID:254786See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641364.1 ENSP00000493034.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641364.1Link to Ensembl Protein Viewer:ENSP00000493034.1Re-query CCDS DB by Nucleotide ID:ENST00000641364Re-query CCDS DB by Protein ID:ENSP00000493034
Original member Current member EBI ENST00000641740.2 ENSP00000493380.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641740.2Link to Ensembl Protein Viewer:ENSP00000493380.1Re-query CCDS DB by Nucleotide ID:ENST00000641740Re-query CCDS DB by Protein ID:ENSP00000493380
Original member Current member NCBI NM_001388498.1 NP_001375427.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388498.1Link to Protein Sequence:NP_001375427.1Re-query CCDS DB by Nucleotide ID:NM_001388498Re-query CCDS DB by Protein ID:NP_001375427Link to BLAST:NP_001375427.1
Original member Current member NCBI NM_054104.2 NP_473445.1 Accepted alive Link to Nucleotide Sequence:NM_054104.2Link to Protein Sequence:NP_473445.1Re-query CCDS DB by Nucleotide ID:NM_054104Re-query CCDS DB by Protein ID:NP_473445Link to BLAST:NP_473445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001375427.1 311 Q9NZP0 311 100% 0 0
NP_473445.1 311 Q9NZP0 311 100% 0 0

Chromosomal Locations for CCDS 31819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55331701 55332636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAACCACACAATGGTCACAGAGTTTGTCCTCCTGGGCCTTTCTGATGATCCTGACCTTCAGATTGTGA
TTTTTCTCTTTTTATTTATCACGTATATATTAAGTGTTACTGGAAACCTGACTATCATCACCCTAACCTT
TGTGGACTCCCATCTGCAGACACCTATGTATTTCTTCCTCCGGAACTTCTCTTTCTTAGAAATCTCATTT
ACAACCGTATGCATCCCCAGATTTCTGGGGGCAATTATCACCAGGAATAAGACTATTTCCTATAACAACT
GTGCAGCCCAACTCTTTTTCTTTATCTTCATGGGGGTGACTGAATTTTACATTTTAACTGCCATGTCCTA
TGACCGCTATGTTGCCATCTGCAAGCCCCTTCATTACACATCCATCATGAACAGGAAACTCTGCACTCTA
CTTGTGCTGTGTGCCTGGCTAAGTGGGTTTCTGACCATTTTCCCACCCCTTATGCTTCTCCTCCAGCTGG
ATTACTGTGCTTCCAACGTCATTGATCACTTTGCATGTGACTATTTTCCCCTCTTACAACTATCTTGTTC
AGATACATGGCTCCTAGAAGTAATTGGTTTTTACTTTGCTTTGGTTACTTTGCTGTTCACTTTGGCATTA
GTGATTTTATCTTACATGTACATTATCAGGACCATTTTGAGAATCCCGTCTGCCAGTCAAAGAAAAAAGG
CTTTCTCCACTTGTTCTTCTCACATGATTGTCATTTCCATTTCTTATGGAAGCTGTATATTCATGTATGC
TAATCCATCTGCAAAAGAAAAGGCATCATTGACAAAAGGAATAGCTATTCTCAATACATCTGTTGCCCCC
ATGCTGAACCCCTTCATTTACACTCTGAGAAACCAGCAAGTAAAACAAGCCTTCAAAAATGTGGTCCACA
AAGTTGTGTTTTATGCAAATCAATGA

Translation (311 aa):
MNHTMVTEFVLLGLSDDPDLQIVIFLFLFITYILSVTGNLTIITLTFVDSHLQTPMYFFLRNFSFLEISF
TTVCIPRFLGAIITRNKTISYNNCAAQLFFFIFMGVTEFYILTAMSYDRYVAICKPLHYTSIMNRKLCTL
LVLCAWLSGFLTIFPPLMLLLQLDYCASNVIDHFACDYFPLLQLSCSDTWLLEVIGFYFALVTLLFTLAL
VILSYMYIIRTILRIPSASQRKKAFSTCSSHMIVISISYGSCIFMYANPSAKEKASLTKGIAILNTSVAP
MLNPFIYTLRNQQVKQAFKNVVHKVVFYANQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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