NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45956.1 Public Homo sapiens 19 ZNF562 24 110 108 CCDS HistoryNCBI Gene:54811Re-query CCDS DB by CCDS ID:45956.1Re-query CCDS DB by GeneID:54811See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453372.7 ENSP00000410734.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453372.7Link to Ensembl Protein Viewer:ENSP00000410734.1Re-query CCDS DB by Nucleotide ID:ENST00000453372Re-query CCDS DB by Protein ID:ENSP00000410734
Original member Current member NCBI NM_001130031.2 NP_001123503.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130031.2Link to Protein Sequence:NP_001123503.1Re-query CCDS DB by Nucleotide ID:NM_001130031Re-query CCDS DB by Protein ID:NP_001123503Link to BLAST:NP_001123503.1
Original member Current member NCBI NM_001130032.2 NP_001123504.1 Accepted alive Link to Nucleotide Sequence:NM_001130032.2Link to Protein Sequence:NP_001123504.1Re-query CCDS DB by Nucleotide ID:NM_001130032Re-query CCDS DB by Protein ID:NP_001123504Link to BLAST:NP_001123504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123503.1 426 Q6V9R5-1 426 100% 0 0
NP_001123504.1 426 Q6V9R5-1 426 100% 0 0

Chromosomal Locations for CCDS 45956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9652949 9653881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9656547 9656653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9658009 9658135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9659379 9659467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9660720 9660744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGTCAGCCTTTGATATGTCCCATGGGTTTTTTCCCAGGGAACCAATCTGTCCTTTTGAAGAAAAGACAA
AGATAGGAACGATGGTAGAGGACCACCGGTCAAATTCTTACCAGGATTCAGTGACGTTTGATGATGTGGC
TGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATG
CTGGAGAACTACATGAACCTGGCCTCTGTGGATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAAC
CTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATGCA
GACAAGAAGCTACAGTGGATGGAAACTCTGTGAGAATTGTGGAGAGGTCTTCAGTGAACAGTTTTGCCTT
AAGACACACATGAGAGCTCAGAATGGAGGGAACACTTTTGAGGGTAATTGTTATGGAAAAGACAGCATCA
GTGTGCACAAGGAAGCCTCTATTGGACAAGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTT
AACTCCAGGCCTTGCTGTGCATCTTGAAATTCTCAATGGAAGACAACCCTACAAATGTAAGGAATGTGGA
AAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAACTCTGTGAAT
TTCAGGAATGTGAGAGAGCCATCACAACTTCCTCACACTTAAAGCAGTGTGTAGCAGTTCATACTGGAAA
GAAATCCGAAAAGACTAAGAACTGTGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGCAAAA
ACTCATAAAGGAGAGAAGTCCTTTGAATGTAAAGAATGTGGAAGATCCTTTAGAAATTCCTCATCCTTTA
ATGTTCACATTCAAATTCACACTGGAATAAAACCACACAAATGTACGGAATGTGGGAAAGCCTTCACTAG
ATCAACTCACCTTACTCAACATGTAAGAACTCACACTGGAATAAAACCCTATGAATGTAAGGAATGTGGC
CAAGCCTTCACTCAGTACACGGGCCTTGCTATACACATACGAAATCACACTGGAGAGAAACCCTATCAGT
GTAAGGAATGTGGGAAAGCCTTCAATAGATCTTCAACGCTTACTCAACATAGAAGAATTCACACAGGAGA
GAAGCCTTATGAATGTGTTGAATGTGGGAAGACCTTCATTACTTCTTCCCATCGTAGTAAACATTTGAAA
ACTCACAGTGGAGAAAGGTAA

Translation (426 aa):
MSAFDMSHGFFPREPICPFEEKTKIGTMVEDHRSNSYQDSVTFDDVAVEFTPEEWALLDTTQKYLYRDVM
LENYMNLASVDFFFCLTSEWEIQPRTKRSSLQQGFLKNQIFTGIQMQTRSYSGWKLCENCGEVFSEQFCL
KTHMRAQNGGNTFEGNCYGKDSISVHKEASIGQELSKFNPCGKVFTLTPGLAVHLEILNGRQPYKCKECG
KGFKYFASLDNHMGIHIGEKLCEFQECERAITTSSHLKQCVAVHTGKKSEKTKNCGKSFTNFSQLSAHAK
THKGEKSFECKECGRSFRNSSSFNVHIQIHTGIKPHKCTECGKAFTRSTHLTQHVRTHTGIKPYECKECG
QAFTQYTGLAIHIRNHTGEKPYQCKECGKAFNRSSTLTQHRRIHTGEKPYECVECGKTFITSSHRSKHLK
THSGER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH