NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3816.1 Public Homo sapiens 4 HMGB2 24 110 108 CCDS HistoryNCBI Gene:3148Re-query CCDS DB by CCDS ID:3816.1Re-query CCDS DB by GeneID:3148See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296503.10 ENSP00000296503.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296503.10Link to Ensembl Protein Viewer:ENSP00000296503.5Re-query CCDS DB by Nucleotide ID:ENST00000296503Re-query CCDS DB by Protein ID:ENSP00000296503
Original member Current member EBI ENST00000446922.6 ENSP00000393448.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446922.6Link to Ensembl Protein Viewer:ENSP00000393448.2Re-query CCDS DB by Nucleotide ID:ENST00000446922Re-query CCDS DB by Protein ID:ENSP00000393448
Original member Current member EBI ENST00000438704.6 ENSP00000404912.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438704.6Link to Ensembl Protein Viewer:ENSP00000404912.2Re-query CCDS DB by Nucleotide ID:ENST00000438704Re-query CCDS DB by Protein ID:ENSP00000404912
Original member Current member NCBI NM_001130688.1 NP_001124160.1 Accepted alive Link to Nucleotide Sequence:NM_001130688.1Link to Protein Sequence:NP_001124160.1Re-query CCDS DB by Nucleotide ID:NM_001130688Re-query CCDS DB by Protein ID:NP_001124160Link to BLAST:NP_001124160.1
Original member Current member NCBI NM_001130689.1 NP_001124161.1 Accepted alive Link to Nucleotide Sequence:NM_001130689.1Link to Protein Sequence:NP_001124161.1Re-query CCDS DB by Nucleotide ID:NM_001130689Re-query CCDS DB by Protein ID:NP_001124161Link to BLAST:NP_001124161.1
Original member Current member NCBI NM_002129.4 NP_002120.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002129.4Link to Protein Sequence:NP_002120.1Re-query CCDS DB by Nucleotide ID:NM_002129Re-query CCDS DB by Protein ID:NP_002120Link to BLAST:NP_002120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124160.1 209 P26583 209 100% 0 0
NP_001124161.1 209 P26583 209 100% 0 0
NP_002120.1 209 P26583 209 100% 0 0

Chromosomal Locations for CCDS 3816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 173332080 173332238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 173332821 173332995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 173333069 173333214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 173333500 173333649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGGTAAAGGAGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCC
GGGAAGAGCACAAGAAGAAACACCCGGACTCTTCCGTCAATTTCGCGGAATTCTCCAAGAAGTGTTCGGA
GAGATGGAAGACCATGTCTGCAAAGGAGAAGTCGAAGTTTGAAGATATGGCAAAAAGTGACAAAGCTCGC
TATGACAGGGAGATGAAAAATTACGTTCCTCCCAAAGGTGATAAGAAGGGGAAGAAAAAGGACCCCAATG
CTCCTAAAAGGCCACCATCTGCCTTCTTCCTGTTTTGCTCTGAACATCGCCCAAAGATCAAAAGTGAACA
CCCTGGCCTATCCATTGGGGATACTGCAAAGAAATTGGGTGAAATGTGGTCTGAGCAGTCAGCCAAAGAT
AAACAACCATATGAACAGAAAGCAGCTAAGCTAAAGGAGAAATATGAAAAGGATATTGCTGCATATCGTG
CCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAACGAACC
AGAAGATGAGGAGGAGGAGGAGGAAGAAGAAGATGAAGATGAGGAGGAAGAGGATGAAGATGAAGAATAA

Translation (209 aa):
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKAR
YDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKD
KQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH