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Report for CCDS41288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41288.1 Public Homo sapiens 1 UBXN11 24 110 108 CCDS HistoryNCBI Gene:91544Re-query CCDS DB by CCDS ID:41288.1Re-query CCDS DB by GeneID:91544See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374221.7 ENSP00000363338.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374221.7Link to Ensembl Protein Viewer:ENSP00000363338.3Re-query CCDS DB by Nucleotide ID:ENST00000374221Re-query CCDS DB by Protein ID:ENSP00000363338
Original member Current member EBI ENST00000374222.6 ENSP00000363339.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374222.6Link to Ensembl Protein Viewer:ENSP00000363339.1Re-query CCDS DB by Nucleotide ID:ENST00000374222Re-query CCDS DB by Protein ID:ENSP00000363339
Original member Current member NCBI NM_001389556.1 NP_001376485.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001389556.1Link to Protein Sequence:NP_001376485.1Re-query CCDS DB by Nucleotide ID:NM_001389556Re-query CCDS DB by Protein ID:NP_001376485Link to BLAST:NP_001376485.1
Original member Current member NCBI NM_183008.3 NP_892120.2 Accepted alive Link to Nucleotide Sequence:NM_183008.3Link to Protein Sequence:NP_892120.2Re-query CCDS DB by Nucleotide ID:NM_183008Re-query CCDS DB by Protein ID:NP_892120Link to BLAST:NP_892120.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001376485.1 520 Q5T124-1 520 100% 0 0
NP_892120.2 520 Q5T124-1 520 100% 0 0

Chromosomal Locations for CCDS 41288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26282299 26282569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282649 26282789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282864 26282937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284142 26284245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284362 26284482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285464 26285541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285823 26286037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26294205 26294331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26296919 26296995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26297427 26297481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26297962 26298062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26300926 26301024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26301694 26301722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26302813 26302883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGAGCTCACCTTTGGCCTCCCTTAGCAAGACCCGAAAAGTGCCCCTGCCCTCGGAGCCTATGAATCCTG
GGAGGCGAGGAATCCGCATCTATGGAGATGAAGATGAGGTGGACATGTTGAGTGATGGGTGTGGCTCAGA
AGAAAAGATCTCAGTCCCTTCCTGCTATGGCGGCATAGGTGCCCCTGTGAGTCGGCAAGTCCCTGCATCC
CATGACTCGGAGCTGATGGCCTTCATGACGAGGAAGTTGTGGGACCTGGAGCAGCAGGTGAAGGCCCAGA
CTGATGAGATACTGTCCAAGGATCAGAAGATAGCGGCCCTAGAGGACCTGGTGCAGACCCTCCGGCCACA
CCCAGCCGAGGCAACCCTGCAGCGGCAGGAGGAACTGGAGACGATGTGTGTGCAGCTGCAGCGGCAGGTC
AGGGAGATGGAGCGGTTCCTCAGTGACTATGGCCTGCAGTGGGTGGGCGAGCCCATGGACCAGGAGGACT
CAGAGAGCAAGACAGTCTCAGAGCATGGCGAGAGGGACTGGATGACAGCCAAGAAGTTCTGGAAGCCAGG
GGACTCATTGGCGCCCCCTGAGGTGGACTTTGACAGGCTGCTGGCCAGCCTGCAGGATCTTAGTGAGCTG
GTGGTAGAGGGTGACACCCAAGTGACACCAGTGCCCGGCGGGGCACGGCTGCGTACCCTCGAGCCCATCC
CGCTGAAGCTCTACCGGAATGGCATCATGATGTTCGACGGGCCCTTCCAGCCCTTCTACGATCCCTCCAC
ACAGCGCTGCCTCCGAGACATATTGGATGGCTTCTTTCCCTCAGAGCTCCAGCGACTGTACCCCAATGGG
GTCCCCTTTAAGGTGAGTGACTTGCGCAATCAGGTCTACCTGGAGGATGGACTGGACCCCTTCCCAGGCG
AGGGCCGTGTGGTGGGCAGGCAGCTGATGCACAAGGCCTTGGACAGGGTGGAGGAGCACCCAGGCTCCAG
GATGACTGCTGAGAAATTTCTGAACAGGCTCCCCAAGTTTGTGATCCGGCAAGGCGAGGTGATTGACATC
CGGGGCCCCATCAGGGACACCTTGCAGAACTGCTGCCCATTGCCTGCCCGGATCCAGGAGATTGTGGTGG
AGACGCCCACCTTGGCCGCTGAGCGAGAGAGGAGCCAGGAGTCACCCAACACGCCGGCACCCCCGCTCTC
CATGCTGCGCATCAAGTCTGAGAATGGGGAACAGGCCTTCCTACTGATGATGCAGCCTGACAACACCATT
GGGGACGTGCGAGCTCTGCTAGCGCAGGCCAGGGTCATGGATGCCTCTGCCTTTGAGATCTTCAGCACAT
TCCCGCCCACCCTCTACCAGGACGATACACTCACGCTGCAGGCTGCAGGCCTTGTGCCCAAAGCAGCACT
GCTGCTGCGGGCACGCCGAGCCCCGAAGTCCAGCCTGAAATTCAGTCCTGGTCCCTGTCCCGGTCCCGGT
CCCGGCCCCAGTCCCGGTCCCGGTCCCGGCCCCAGTCCCGGTCCCGGTCCCGGCCCCAGTCCCTGTCCTG
GACCCAGTCCCAGCCCCCAATAA

Translation (520 aa):
MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDEDEVDMLSDGCGSEEKISVPSCYGGIGAPVSRQVPAS
HDSELMAFMTRKLWDLEQQVKAQTDEILSKDQKIAALEDLVQTLRPHPAEATLQRQEELETMCVQLQRQV
REMERFLSDYGLQWVGEPMDQEDSESKTVSEHGERDWMTAKKFWKPGDSLAPPEVDFDRLLASLQDLSEL
VVEGDTQVTPVPGGARLRTLEPIPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG
VPFKVSDLRNQVYLEDGLDPFPGEGRVVGRQLMHKALDRVEEHPGSRMTAEKFLNRLPKFVIRQGEVIDI
RGPIRDTLQNCCPLPARIQEIVVETPTLAAERERSQESPNTPAPPLSMLRIKSENGEQAFLLMMQPDNTI
GDVRALLAQARVMDASAFEIFSTFPPTLYQDDTLTLQAAGLVPKAALLLRARRAPKSSLKFSPGPCPGPG
PGPSPGPGPGPSPGPGPGPSPCPGPSPSPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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