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Report for CCDS13802.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13802.2 Public Homo sapiens 22 GGTLC2 24 110 108 CCDS HistoryNCBI Gene:91227Re-query CCDS DB by CCDS ID:13802.2Re-query CCDS DB by GeneID:91227See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 13802.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13802.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448514.3 ENSP00000415676.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448514.3Link to Ensembl Protein Viewer:ENSP00000415676.2Re-query CCDS DB by Nucleotide ID:ENST00000448514Re-query CCDS DB by Protein ID:ENSP00000415676
Original member Current member EBI ENST00000480559.6 ENSP00000419751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000480559.6Link to Ensembl Protein Viewer:ENSP00000419751.1Re-query CCDS DB by Nucleotide ID:ENST00000480559Re-query CCDS DB by Protein ID:ENSP00000419751
Original member Current member NCBI NM_199127.3 NP_954578.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199127.3Link to Protein Sequence:NP_954578.2Re-query CCDS DB by Nucleotide ID:NM_199127Re-query CCDS DB by Protein ID:NP_954578Link to BLAST:NP_954578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954578.2 218 Q14390 218 100% 0 0

Chromosomal Locations for CCDS 13802.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 22646346 22646521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22646754 22646881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22646983 22647038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22647141 22647290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22647595 22647741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGACCTCTGAGTTCTTCGCTGCCCAGCTCCGGGCCCAGATCTCTGACGACACCACTCACCCGATCTCCT
ACTACAAGCCCGAGTTCTACACGCCGGTTGATGGGGGCACTGCTCACCTGTCTGTCGTCGCAGAGGACGG
CAGTGCTGTGTCCGCCACCAGCACCATCAACCTCTACTTTGGCTCCAAGGTCCGCTCCCCGGTCAGCGAG
ATCCTGTTCAATGATGAAATGGATGACTTCAGCTCTCCCAACATCACCAACGAGTTTGGGGTGCCCCCCT
CACCTGCCAATTTCATCCAGCCAGGGAAGCAGCCGCTCTCGTCAATGTGCCCGACGATCATGGTGGGCCA
GGACGGCCAGCCCCCAAGCCATGCTGATCACACTCCCATGCCCCAGGCCATCATCTACAACCTCTGGTTC
GGCTATGACGTGAAGCGGGCCGTGGAGGAGCCCCGGCTGCACAACCAGCTTCTGCCCAACGTCACGACAG
TGGAGAGAAACATTGACCAGGCAGTGACTGCAGCCCTGGAGACCCGGCACCATCACACCCAGATCGCGTC
CACCTTCATCGCTGTGGTGCAAGCCATCGTCCGCACGGCTGGTGGCTGGGCAGCTGCCTCGGACTCCAGG
AAAGGCGGGGAGCCTGCCGGCTACTGA

Translation (218 aa):
MTSEFFAAQLRAQISDDTTHPISYYKPEFYTPVDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSE
ILFNDEMDDFSSPNITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQPPSHADHTPMPQAIIYNLWF
GYDVKRAVEEPRLHNQLLPNVTTVERNIDQAVTAALETRHHHTQIASTFIAVVQAIVRTAGGWAAASDSR
KGGEPAGY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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