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Report for CCDS45801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45801.1 Public Homo sapiens 17 AFMID 24 110 108 CCDS HistoryNCBI Gene:125061Re-query CCDS DB by CCDS ID:45801.1Re-query CCDS DB by GeneID:125061See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45801.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327898.9 ENSP00000328938.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327898.9Link to Ensembl Protein Viewer:ENSP00000328938.5Re-query CCDS DB by Nucleotide ID:ENST00000327898Re-query CCDS DB by Protein ID:ENSP00000328938
Original member Current member NCBI NM_001145526.3 NP_001138998.1 Accepted alive Link to Nucleotide Sequence:NM_001145526.3Link to Protein Sequence:NP_001138998.1Re-query CCDS DB by Nucleotide ID:NM_001145526Re-query CCDS DB by Protein ID:NP_001138998Link to BLAST:NP_001138998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138998.1 308 Q63HM1-2 308 100% 0 0

Chromosomal Locations for CCDS 45801.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78187371 78187433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78190970 78191060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78202499 78202603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78202703 78202751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78204656 78204741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78204828 78204900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78205093 78205190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78205440 78205518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78205603 78205753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78205946 78206050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78206911 78206937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGATGGATGTGTCTGGTGTGGGTTTCCCAAGCAAGGTTCCTTGGAAGAAGATGTCTGCAGAGGAGCTGG
AGAATCAGTACTGTCCCAGCCGATGGGTTGTCCGACTGGGAGCAGAGGAAGCCTTGAGGACCTACTCACA
GATAGGAATTGAAGCCACCACAAGGGCCCGGGCCACCAGGAAGAGCCTGCTGCATGTCCCCTATGGAGAC
GGCGAAGGGGAGAAAGTGGACATTTACTTCCCCGACGAGTCGTCTGAAGCCTTGCCTTTCTTCCTGTTCT
TTCACGGAGGATACTGGCAGAGCGGAAGTAAGGATGAGTCTGCCTTCATGGTCCACCCGCTGACGGCACA
GGGAGTGGCCGTGGTAATAGTGGCTTACGGCATCGCCCCCAAAGGCACCCTGGACCACATGGTAGACCAG
GTGACCCGCAGCGTTGCGTTTGTCCAGAAGCGGTATCCAAGCAACAAGGGAATTTACCTGTGTGGACACT
CAGCCGGGGCCCACCTGGCTGCCATGATGCTCCTGGCCGACTGGACCAAGCATGGGGTCACGCCCAACCT
CAGAGGCTTTTTCCTGGTGAGTGGGGTCTTTGACCTGGAGCCCATCGTGTATACTTCACAGAACGTTGCT
CTCCAGCTGACCCTGGAGGACGCTCAGAGGAATAGCCCCCAGCTGAAGGTGGCCCAGGCACAGCCGGTGG
ACCCCACCTGCCGTGTGCTGGTGGTCGTGGGCCAGTTCGACTCCCCCGAATTCCACCGACAGTCCTGGGA
GTTTTACCAGGTACTCCCAGTGCAGACCCTGTGTCAAGGAGAGTGGAAAGCCTCATTTGAAGAGCTCCAC
GATGTGGACCACTTTGAAATTGTTGAGAATCTGACCCAGAAGGACAACGTGCTCACCCAGATTATCTTGA
AAACAATCTTCCAGTAG

Translation (308 aa):
MMDVSGVGFPSKVPWKKMSAEELENQYCPSRWVVRLGAEEALRTYSQIGIEATTRARATRKSLLHVPYGD
GEGEKVDIYFPDESSEALPFFLFFHGGYWQSGSKDESAFMVHPLTAQGVAVVIVAYGIAPKGTLDHMVDQ
VTRSVAFVQKRYPSNKGIYLCGHSAGAHLAAMMLLADWTKHGVTPNLRGFFLVSGVFDLEPIVYTSQNVA
LQLTLEDAQRNSPQLKVAQAQPVDPTCRVLVVVGQFDSPEFHRQSWEFYQVLPVQTLCQGEWKASFEELH
DVDHFEIVENLTQKDNVLTQIILKTIFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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