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Report for CCDS44494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44494.1 Public Homo sapiens 10 JAKMIP3 24 110 108 CCDS HistoryNCBI Gene:282973Re-query CCDS DB by CCDS ID:44494.1Re-query CCDS DB by GeneID:282973See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 44494.1
This CCDS ID represents the protein described in PMID: 17572408. The full-length exon combination of this transcript is based on a combination of mouse (AK220482.1) and human (AK126964.1) partial transcripts. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 44494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298622.9 ENSP00000298622.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298622.9Link to Ensembl Protein Viewer:ENSP00000298622.4Re-query CCDS DB by Nucleotide ID:ENST00000298622Re-query CCDS DB by Protein ID:ENSP00000298622
Original member Current member EBI ENST00000664697.1 ENSP00000499375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000664697.1Link to Ensembl Protein Viewer:ENSP00000499375.1Re-query CCDS DB by Nucleotide ID:ENST00000664697Re-query CCDS DB by Protein ID:ENSP00000499375
Original member Current member EBI ENST00000668452.1 ENSP00000499753.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000668452.1Link to Ensembl Protein Viewer:ENSP00000499753.1Re-query CCDS DB by Nucleotide ID:ENST00000668452Re-query CCDS DB by Protein ID:ENSP00000499753
Original member Current member NCBI NM_001105521.4 NP_001098991.1 Accepted alive Link to Nucleotide Sequence:NM_001105521.4Link to Protein Sequence:NP_001098991.1Re-query CCDS DB by Nucleotide ID:NM_001105521Re-query CCDS DB by Protein ID:NP_001098991Link to BLAST:NP_001098991.1
Original member Current member NCBI NM_001323090.2 NP_001310019.1 Accepted alive Link to Nucleotide Sequence:NM_001323090.2Link to Protein Sequence:NP_001310019.1Re-query CCDS DB by Nucleotide ID:NM_001323090Re-query CCDS DB by Protein ID:NP_001310019Link to BLAST:NP_001310019.1
Original member Current member NCBI NM_001392043.1 NP_001378972.1 Accepted alive Link to Nucleotide Sequence:NM_001392043.1Link to Protein Sequence:NP_001378972.1Re-query CCDS DB by Nucleotide ID:NM_001392043Re-query CCDS DB by Protein ID:NP_001378972Link to BLAST:NP_001378972.1
Original member Current member NCBI NM_001392044.1 NP_001378973.1 Accepted alive Link to Nucleotide Sequence:NM_001392044.1Link to Protein Sequence:NP_001378973.1Re-query CCDS DB by Nucleotide ID:NM_001392044Re-query CCDS DB by Protein ID:NP_001378973Link to BLAST:NP_001378973.1
Original member Current member NCBI NM_001392045.1 NP_001378974.1 Accepted alive Link to Nucleotide Sequence:NM_001392045.1Link to Protein Sequence:NP_001378974.1Re-query CCDS DB by Nucleotide ID:NM_001392045Re-query CCDS DB by Protein ID:NP_001378974Link to BLAST:NP_001378974.1
Original member Current member NCBI NM_001392046.1 NP_001378975.1 Accepted alive Link to Nucleotide Sequence:NM_001392046.1Link to Protein Sequence:NP_001378975.1Re-query CCDS DB by Nucleotide ID:NM_001392046Re-query CCDS DB by Protein ID:NP_001378975Link to BLAST:NP_001378975.1
Original member Current member NCBI NM_001392047.1 NP_001378976.1 Accepted alive Link to Nucleotide Sequence:NM_001392047.1Link to Protein Sequence:NP_001378976.1Re-query CCDS DB by Nucleotide ID:NM_001392047Re-query CCDS DB by Protein ID:NP_001378976Link to BLAST:NP_001378976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098991.1 844 Q5VZ66 844 100% 0 0
NP_001310019.1 844 Q5VZ66 844 100% 0 0
NP_001378972.1 844 Q5VZ66 844 100% 0 0
NP_001378973.1 844 Q5VZ66 844 100% 0 0
NP_001378974.1 844 Q5VZ66 844 100% 0 0
NP_001378975.1 844 Q5VZ66 844 100% 0 0
NP_001378976.1 844 Q5VZ66 844 100% 0 0

Chromosomal Locations for CCDS 44494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 132104809 132104943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132117077 132117574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132133312 132133527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135041 132135160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135930 132136076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137019 132137150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137254 132137289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132138119 132138178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132140451 132140579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132141920 132142048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145107 132145190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145518 132145580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132147952 132148050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149412 132149510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149982 132150035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132152958 132153023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153759 132153827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153913 132153990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132163209 132163412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132164670 132164735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132166983 132167033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2535 nt):
ATGTCCAAGAGGGGCATGAGCAGCCGGGCCAAGGGGGACAAGGCAGAGGCCCTCGCGGCGCTGCAGGCGG
CCAACGAGGATCTTCGAGCCAAGCTCACAGACATCCAGATCGAGCTGCAGCAGGAGAAGAGCAAGGTCAG
CAAAGTGGAACGCGAGAAGAACCAGGAGCTGCGGCAGGTGCGCGAGCATGAGCAGCATAAGACCGCGGTC
TTGCTCACGGAGCTCAAGACAAAGCTGCACGAGGAGAAGATGAAGGAGCTACAGGCTGTGCGTGAGACGC
TGCTGCGGCAGCATGAGGCTGAGCTGCTCAGGGTCATCAAGATCAAGGACAACGAGAACCAGCGGCTGCA
GGCACTGCTCAGTGCCCTGCGTGATGGCGGCCCCGAAAAGGTCAAGACCGTGCTGCTGTCCGAGGCCAAG
GAGGAGGCCAAGAAGGGGTTCGAGGTGGAGAAGGTCAAGATGCAGCAGGAGATCTCCGAGCTCAAGGGCG
CCAAAAGGCAGGTGGAGGAGGCGCTGACGCTGGTGATCCAAGCGGACAAGATCAAGGCCGCAGAGATCCG
CAGCGTGTACCACCTGCACCAGGAGGAGATCACCCGCATCAAGAAGGAGTGCGAGCGGGAGATCCGCAGG
CTGATGGAGGAGATAAAATTTAAAGACAGAGCAGTCTTCGTGCTGGAGAGAGAGTTAGGGGTTCAAGCCG
GGCATGCTCAGAGACTGCAGCTCCAAAAAGAGGCTCTAGATGAGCAGCTGTCCCAGGTCCGAGAGGCCGA
CCGGCACCCGGGCAGCCCCAGACGGGAACTTCCTCATGCAGCTGGTGCAGGAGACGCTTCAGACCACTCG
GGAAGCCCTGAACAGCAGTTGGATGAAAAAGATGCCCGGCGCTTCCAGCTTAAAATCGCGGAGTTAAGTG
CGATTATCCGCAAACTGGAGGACCGCAATGCATTGCTGTCGGAAGAGAGGAATGAGCTGTTGAAGCGCGT
AAGAGAAGCTGAGAGTCAGTACAAGCCTCTGCTGGATAAAAACAAGCGCCTCAGTCGGAAGAACGAGGAT
TTGTCTCATGCTTTACGCCGAATGGAAAACAAGTTAAAATTTGTCACCCAGGAGAACATAGAAATGAGAC
AGAGAGCTGGAATCATACGGAGACCCAGTTCCTTGAATGACCTTGATCAAAGTCAGGATGAGAGAGAAGT
CGATTTCTTGAAGCTTCAGATTGTGGAGCAGCAAAACCTCATAGATGAACTGTCTAAGACCCTTGAGACC
GCCGGCTACGTGAAGAGCGTGTTAGAGCGGGACAAGCTGTTAAGATTCCGGAAGCAAAGAAAGAAAATGG
CAAAACTTCCCAAGCCGGTGGTTGTGGAGACCTTCTTTGGATACGACGAAGAGGCTTCCCTGGAATCCGA
CGGCTCCTCCGTCTCTTACCAAACAGACAGGACGGACCAGACCCCGTGCACCCCGGACGATGACTTGGAG
GAGGGCATGGCCAAGGAGGAGACGGAGCTGAGGTTCCGGCAGCTGACCATGGAGTACCAGGCCCTGCAGC
GTGCCTACGCTTTGTTGCAGGAGCAGGTTGGAGGGACGCTGGACGCAGAGCGAGAAGTTAAGACCCGTGA
GCAGCTACAAGCCGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGAAGGCCCTGGCGGAGCAG
GGGCAGGATATGAAGTGGATTGAAGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGTGGAAAAGA
TCAAACAAATGGAGACGGAAGAGGCTCGGCTCAGACACGAGGTGCAGGACGCCAGAGACCAAAACGAGCT
GCTGGAGTTCAGGATCCTGGAGCTTGAGGAGAGGGAGAGGAAGTCACCCGCCATCAGCTTCCACCACACG
CCCTTCGTGGACGGGAAGAGCCCCCTCCAGGTGTACTGCGAGGCCGAAGGTGTGACGGACATTGTGGTTG
CGGAGCTGATGAAGAAGCTGGACATCCTGGGCGATAACGCCAACCTGACCAATGAGGAGCAGGTGGTTGT
CATACAAGCCAGGACAGTCCTGACCTTGGCCGAAAAGTGGCTCCAGCAGATTGAGGAGACAGAGGCGGCG
CTGCAGCGGAAGATGGTGGATCTGGAGAGCGAGAAGGAGCTGTTCAGTAAGCAGAAGGGCTACCTGGACG
AGGAGCTGGACTACCGGAAACAGGCCTTGGACCAGGCCAACAAGCACATCCTGGAGCTGGAAGCCATGCT
GTATGATGCCCTGCAGCAGGAGGCCGGGGCTAAGGTGGCTGAGCTGCTGTCAGAGGAGGAGCGCGAGAAG
CTCAAGGTGGCCGTGGAGCAGTGGAAGCGCCAGGTCATGAGTGAGCTGCGCGAGCGGGACGCCCAGATCC
TGCGGGAGCGCATGGAGCTGCTGCAGCTGGCTCAGCAGAGAATTAAAGAGTTAGAAGAAAGAATAGAAGC
TCAGAAGAGACAAATAAAGGAACTGGAGGAAAAGTTTCTATTTTTGTTCTTATTTTTCTCCTTAGCTTTC
ATTCTCTGGTCATAG

Translation (844 aa):
MSKRGMSSRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAV
LLTELKTKLHEEKMKELQAVRETLLRQHEAELLRVIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAK
EEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRR
LMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGAGDASDHS
GSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNED
LSHALRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLET
AGYVKSVLERDKLLRFRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLE
EGMAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQ
GQDMKWIEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAISFHHT
PFVDGKSPLQVYCEAEGVTDIVVAELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQIEETEAA
LQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREK
LKVAVEQWKRQVMSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKFLFLFLFFSLAF
ILWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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