NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8254.1 Public Homo sapiens 11 AAMDC 24 110 108 CCDS HistoryNCBI Gene:28971Re-query CCDS DB by CCDS ID:8254.1Re-query CCDS DB by GeneID:28971See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393427.7 ENSP00000377078.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393427.7Link to Ensembl Protein Viewer:ENSP00000377078.2Re-query CCDS DB by Nucleotide ID:ENST00000393427Re-query CCDS DB by Protein ID:ENSP00000377078
Original member Current member EBI ENST00000526415.5 ENSP00000431808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526415.5Link to Ensembl Protein Viewer:ENSP00000431808.1Re-query CCDS DB by Nucleotide ID:ENST00000526415Re-query CCDS DB by Protein ID:ENSP00000431808
Original member Current member EBI ENST00000525034.1 ENSP00000432830.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525034.1Link to Ensembl Protein Viewer:ENSP00000432830.2Re-query CCDS DB by Nucleotide ID:ENST00000525034Re-query CCDS DB by Protein ID:ENSP00000432830
Original member Current member NCBI NM_001316960.2 NP_001303889.1 Accepted alive Link to Nucleotide Sequence:NM_001316960.2Link to Protein Sequence:NP_001303889.1Re-query CCDS DB by Nucleotide ID:NM_001316960Re-query CCDS DB by Protein ID:NP_001303889Link to BLAST:NP_001303889.1
Original member Current member NCBI NM_001316961.2 NP_001303890.1 Accepted alive Link to Nucleotide Sequence:NM_001316961.2Link to Protein Sequence:NP_001303890.1Re-query CCDS DB by Nucleotide ID:NM_001316961Re-query CCDS DB by Protein ID:NP_001303890Link to BLAST:NP_001303890.1
Original member Current member NCBI NM_001316962.2 NP_001303891.1 Accepted alive Link to Nucleotide Sequence:NM_001316962.2Link to Protein Sequence:NP_001303891.1Re-query CCDS DB by Nucleotide ID:NM_001316962Re-query CCDS DB by Protein ID:NP_001303891Link to BLAST:NP_001303891.1
Original member Current member NCBI NM_001363564.2 NP_001350493.2 Accepted alive Link to Nucleotide Sequence:NM_001363564.2Link to Protein Sequence:NP_001350493.2Re-query CCDS DB by Nucleotide ID:NM_001363564Re-query CCDS DB by Protein ID:NP_001350493Link to BLAST:NP_001350493.2
Original member Current member NCBI NM_001392035.1 NP_001378964.1 Accepted alive Link to Nucleotide Sequence:NM_001392035.1Link to Protein Sequence:NP_001378964.1Re-query CCDS DB by Nucleotide ID:NM_001392035Re-query CCDS DB by Protein ID:NP_001378964Link to BLAST:NP_001378964.1
Original member Current member NCBI NM_001392036.1 NP_001378965.1 Accepted alive Link to Nucleotide Sequence:NM_001392036.1Link to Protein Sequence:NP_001378965.1Re-query CCDS DB by Nucleotide ID:NM_001392036Re-query CCDS DB by Protein ID:NP_001378965Link to BLAST:NP_001378965.1
Original member Current member NCBI NM_001392037.1 NP_001378966.1 Accepted alive Link to Nucleotide Sequence:NM_001392037.1Link to Protein Sequence:NP_001378966.1Re-query CCDS DB by Nucleotide ID:NM_001392037Re-query CCDS DB by Protein ID:NP_001378966Link to BLAST:NP_001378966.1
Original member Current member NCBI NM_001392038.1 NP_001378967.1 Accepted alive Link to Nucleotide Sequence:NM_001392038.1Link to Protein Sequence:NP_001378967.1Re-query CCDS DB by Nucleotide ID:NM_001392038Re-query CCDS DB by Protein ID:NP_001378967Link to BLAST:NP_001378967.1
Original member Current member NCBI NM_024684.4 NP_078960.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024684.4Link to Protein Sequence:NP_078960.1Re-query CCDS DB by Nucleotide ID:NM_024684Re-query CCDS DB by Protein ID:NP_078960Link to BLAST:NP_078960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303889.1 122 Q9H7C9-1 122 100% 0 0
NP_001303890.1 122 Q9H7C9-1 122 100% 0 0
NP_001303891.1 122 Q9H7C9-1 122 100% 0 0
NP_001350493.2 122 Q9H7C9-1 122 100% 0 0
NP_001378964.1 122 Q9H7C9-1 122 100% 0 0
NP_001378965.1 122 Q9H7C9-1 122 100% 0 0
NP_001378966.1 122 Q9H7C9-1 122 100% 0 0
NP_001378967.1 122 Q9H7C9-1 122 100% 0 0
NP_078960.1 122 Q9H7C9-1 122 100% 0 0

Chromosomal Locations for CCDS 8254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77842497 77842628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77869722 77869817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77872175 77872315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGACTTCCCCTGAAATTGCTTCCTTATCATGGGGGCAAATGAAAGTAAAAGGCTCTAATACAACCTATA
AGGACTGCAAAGTATGGCCAGGGGGTAGTCGGACTTGGGATTGGAGAGAAACAGGAACTGAGCATTCTCC
TGGTGTGCAGCCTGCAGATGTGAAGGAAGTTGTTGAGAAGGGTGTACAGACTCTTGTGATTGGCCGAGGG
ATGAGTGAGGCCTTGAAGGTGCCTTCATCAACTGTGGAGTACCTCAAGAAACATGGCATTGATGTGCGGG
TCCTCCAGACAGAGCAGGCAGTGAAGGAGTATAATGCCTTGGTTGCCCAAGGGGTCAGGGTGGGAGGTGT
CTTCCATTCCACCTGCTGA

Translation (122 aa):
MTSPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRG
MSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHSTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH