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Report for CCDS28787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28787.1 Public Mus musculus 17 Rhag 23 108 98 CCDS HistoryNCBI Gene:19743Re-query CCDS DB by CCDS ID:28787.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024721.7 ENSMUSP00000024721.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024721.7Link to Ensembl Protein Viewer:ENSMUSP00000024721.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024721Re-query CCDS DB by Protein ID:ENSMUSP00000024721
Original member Current member NCBI NM_011269.2 NP_035399.1 Accepted alive Link to Nucleotide Sequence:NM_011269.2Link to Protein Sequence:NP_035399.1Re-query CCDS DB by Nucleotide ID:NM_011269Re-query CCDS DB by Protein ID:NP_035399Link to BLAST:NP_035399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035399.1 438 Q9QUT0 438 100% 0 0

Chromosomal Locations for CCDS 28787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40811176 40811362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40828363 40828546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40828750 40828900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40831190 40831337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40831576 40831742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40833409 40833546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40834633 40834754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40836017 40836087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40836417 40836490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40839708 40839782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAGGTTCAAATTCCCTCTCATGGCCATAAGCCTGGAAGTTGCTATGATTGTTTTATTTGGATTATTTG
TTGAATATGAGACACCACAGAATGCTTCCCAGAAGAATGCTTCCCACCAGAATGCTTCCCAGCAGGGTAA
CACCTCAAGTTCAGCAAAAAAGGACCAATTTTTTCAGTTGTATCCCTTATTCCAAGATGTGCATGTCATG
ATATTTGTTGGGTTTGGCTTCCTCATGACCTTTCTGAAGAAATATGGTTTCAGTGGTGTGGGTTTCAACC
TCTTTCTTGCTGCTCTGGGCCTCCAATGGGGTACGATTATGCAGGGCCTTCTTCACAGCCACGGAAAGGA
ATTTCACTTCGGAATCTACAATATGATAAATGCAGACTTCAGCACAGCCACAGTTCTCATTTCCTTTGGC
GCTGTCCTGGGGAAAACAAGCCCCATTCAAATGTTGATCATGACAATTCTGGAAATTGCTGTATTTGCTG
GCAACGAATATCTTGTTACTGAATTATTTGAGGCATCTGACACTGGAGCATCAATGACAATCCATGCCTT
TGGAGCTTACTTTGGCTTAGCAGTGGCAGGTGTGTTATATCGGCCTGGACTCAGATGTGAACACCCAAAT
GATGAATCTGTGTACCACTCTGACTTGTTTGCCATGATCGGAACACTTTTCCTGTGGATATTTTGGCCCA
GCTTTAATTCAGCCATTGCTGATCCTGGAGATCATCAGTATAGGGCCATTGTCAACACATACATGTCCCT
TGCAGCCTGTGTGATCACAGCCTATGCCTTGTCCAGCCTTGTAGAGCGCCGAGGCAGGCTGGATATGGTA
CACATTCAGAATGCTACTCTAGCAGGAGGTGTTGCTGTGGGCACATGTGCAGACATGGAAATCCCCCTAT
ATGCTGCTATGACCATTGGAAGCATTGCAGGGATCATCTCTGTGCTTGGATACAAGTTCTTTAGTCCACT
GTTAGCTAATAAACTGATGATCCATGATACATGTGGGGTTCATAACTTGCATGGCTTACCTGGAGTTTTT
GGAGGCCTTGCCAGCATTGTGGCCATAAGCTGGGGGATGTCTACTGCGTCTATGGCTATGCAGGCAGCAG
CACTGGGATCTTCCATTGGCTCAGCGATTGTTGGAGGTTTGCTTACAGGTCTAATTCTGAAGTTGCCTAT
CTGGAACCAGCCACCTGATGAATACTGCTATGATGACTCTGTTTCTTGGAAGGTTCCCAAATTCAGAGAA
CTTGATAATCGCTTCTTTCAACATGCAAATCACAACCACGTGGAACATGAAGTCTAA

Translation (438 aa):
MRFKFPLMAISLEVAMIVLFGLFVEYETPQNASQKNASHQNASQQGNTSSSAKKDQFFQLYPLFQDVHVM
IFVGFGFLMTFLKKYGFSGVGFNLFLAALGLQWGTIMQGLLHSHGKEFHFGIYNMINADFSTATVLISFG
AVLGKTSPIQMLIMTILEIAVFAGNEYLVTELFEASDTGASMTIHAFGAYFGLAVAGVLYRPGLRCEHPN
DESVYHSDLFAMIGTLFLWIFWPSFNSAIADPGDHQYRAIVNTYMSLAACVITAYALSSLVERRGRLDMV
HIQNATLAGGVAVGTCADMEIPLYAAMTIGSIAGIISVLGYKFFSPLLANKLMIHDTCGVHNLHGLPGVF
GGLASIVAISWGMSTASMAMQAAALGSSIGSAIVGGLLTGLILKLPIWNQPPDEYCYDDSVSWKVPKFRE
LDNRFFQHANHNHVEHEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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