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Report for CCDS44459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44459.1 Public Homo sapiens 10 SLC35G1 24 110 108 CCDS HistoryNCBI Gene:159371Re-query CCDS DB by CCDS ID:44459.1Re-query CCDS DB by GeneID:159371See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44459.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427197.2 ENSP00000400932.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427197.2Link to Ensembl Protein Viewer:ENSP00000400932.1Re-query CCDS DB by Nucleotide ID:ENST00000427197Re-query CCDS DB by Protein ID:ENSP00000400932
Original member Current member NCBI NM_001134658.3 NP_001128130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134658.3Link to Protein Sequence:NP_001128130.1Re-query CCDS DB by Nucleotide ID:NM_001134658Re-query CCDS DB by Protein ID:NP_001128130Link to BLAST:NP_001128130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128130.1 365 Q2M3R5-1 365 100% 0 0

Chromosomal Locations for CCDS 44459.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93894034 93894211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93898571 93898751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93900752 93901490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGCGGCCTCAGGACAGCACCGGGGTCGCGGAGCTCCAGGAGCCCGGGCTGCCGCTAACGGACGATGCAC
CCCCGGGCGCCACTGAGGAGCCGGCGGCCGCCGAGGCAGCTGGGGCGCCAGACCGCGGTAGGTGCTGGCT
CTGCCTTTCCTCGCCGTGTTGCTCCCGCACCGAGCCGGAAGCCAAGAAGAAAGCACCCTGTCCTGGACTT
GGCTTGTTTTACACATTATTGTCTGCCTTCCTTTTCTCAGTGGGCTCTTTATTTGTTAAAAAAGTGCAAG
ACGTCCATGCTGTAGAGATTAGTGCGTTTCGATGTGTGTTCCAAATGCTAGTTGTTATCCCTTGCTTAAT
ATACAGAAAAACTGGGTTTATAGGCCCAAAAGGTCAACGAATTTTCCTCATTCTCAGAGGAGTCCTTGGT
TCTACCGCCATGATGCTTATATACTATGCTTACCAGACAATGTCCCTCGCTGATGCCACAGTTATCACGT
TTAGCAGTCCAGTGTTTACGTCCATATTTGCTTGGATATGTCTCAAGGAAAAATATAGCCCTTGGGATGC
TCTTTTCACCGTGTTCACAATCACTGGAGTGATCCTTATCGTGAGACCACCATTTTTGTTTGGTTCCGAC
ACTTCGGGGATGGAAGAAAGCTATTCAGGCCACCTTAAGGGAACATTCGCAGCAATTGGAAGTGCCGTAT
TTGCTGCATCGACTCTAGTTATCCTAAGAAAAATGGGAAAATCTGTGGACTACTTTCTGAGCATTTGGTA
TTATGTAGTACTTGGCCTCGTTGAAAGTGTCATCATCCTCTCTGTATTAGGAGAGTGGAGTCTGCCTTAC
TGTGGGTTGGACAGGCTATTTCTCATATTCATTGGGCTCTTTGGTTTGGGGGGTCAGATATTTATCACAA
AAGCACTTCAAATAGAAAAAGCAGGGCCAGTAGCAATAATGAAGACAATGGATGTGGTCTTTGCTTTTAT
CTTTCAGATTATTTTCTTTAATAATGTGCCAACGTGGTGGACAGTGGGTGGTGCTCTCTGCGTAGTAGCC
AGTAATGTTGGAGCGGCCATTCGTAAATGGTACCAAAGTTCCAAATGA

Translation (365 aa):
MRPQDSTGVAELQEPGLPLTDDAPPGATEEPAAAEAAGAPDRGRCWLCLSSPCCSRTEPEAKKKAPCPGL
GLFYTLLSAFLFSVGSLFVKKVQDVHAVEISAFRCVFQMLVVIPCLIYRKTGFIGPKGQRIFLILRGVLG
STAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIVRPPFLFGSD
TSGMEESYSGHLKGTFAAIGSAVFAASTLVILRKMGKSVDYFLSIWYYVVLGLVESVIILSVLGEWSLPY
CGLDRLFLIFIGLFGLGGQIFITKALQIEKAGPVAIMKTMDVVFAFIFQIIFFNNVPTWWTVGGALCVVA
SNVGAAIRKWYQSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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