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Report for CCDS82072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82072.1 Public Homo sapiens 17 GSG1L2 24 110 108 CCDS HistoryNCBI Gene:644070Re-query CCDS DB by CCDS ID:82072.1Re-query CCDS DB by GeneID:644070See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 82072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399363.5 ENSP00000465978.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399363.5Link to Ensembl Protein Viewer:ENSP00000465978.1Re-query CCDS DB by Nucleotide ID:ENST00000399363Re-query CCDS DB by Protein ID:ENSP00000465978
Original member Current member NCBI NM_001310219.2 NP_001297148.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001310219.2Link to Protein Sequence:NP_001297148.1Re-query CCDS DB by Nucleotide ID:NM_001310219Re-query CCDS DB by Protein ID:NP_001297148Link to BLAST:NP_001297148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297148.1 293 A8MUP6 293 100% 0 0

Chromosomal Locations for CCDS 82072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 9802386 9802644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9807490 9807601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9808830 9808982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9810571 9810618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9821762 9822071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGACAGGGCCAAGCAGCAGCAGGCGCTGCTCCTCCTCCCTGTCTGCCTCGCCCTCACCTTCTCCCTCA
CCGCCGTGGTCAGCAGCCACTGGTGTGAGGGGACCCGACGGGTGGTGAAGCCACTGTGCCAGGACCAGCC
GGGAGGGCAGCACTGCATTCACTTCAAACGGGACAACAGCAGCAATGGCAGGATGGACAACAATAGCCAG
GCTGTCCTGTACATTTGGGAGCTGGGTGATGACAAGTTCATTCAGCGGGGGTTCCATGTGGGGCTCTGGC
AGTCCTGCGAGGAGAGCCTCAACGGTGAAGATGAAAAGTGTAGGAGTTTCCGGAGTGTAGTGCCAGCTGA
AGAACAAGGTGTTTTGTGGCTGTCCATCGGGGGCGAGGTCCTGGATATCGTTCTGATACTGACAAGCGCC
ATCCTCCTGGGCTCCAGAGTGAGTTGTCGCAGCCCTGGGTTCCACTGGCTCAGGGTGGATGCCTTGGTAG
CCATCTTCATGGTGCTGGCAGGGCTTCTAGGCATGGTGGCCCACATGATGTACACAACCATTTTTCAAAT
CACTGTGAACCTTGGACCAGAAGATTGGAAGCCTCAGACCTGGGACTATGGCTGGTCATATTGCCTTGCC
TGGGGTTCTTTCGCCCTCTGCCTGGCTGTGTCGGTCTCGGCCATGAGCAGGTTCACGGCAGCCCGCCTGG
AATTCACCGAGAAGCAGCAGGCACAGAACGGCAGTCGGCACTCTCAACACAGCTTCCTGGAACCCGAGGC
TTCGGAGAGCATTTGGAAAACAGGAGCTGCTCCTTGCCCTGCTGAACAAGCCTTCAGGAATGTTTCTGGA
CACCTCCCACCAGGCGCCCCAGGCAAGGTGTCCATATGCTAG

Translation (293 aa):
MDRAKQQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRMDNNSQ
AVLYIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSA
ILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLA
WGSFALCLAVSVSAMSRFTAARLEFTEKQQAQNGSRHSQHSFLEPEASESIWKTGAAPCPAEQAFRNVSG
HLPPGAPGKVSIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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