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Report for CCDS8686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8686.1 Public Homo sapiens 12 SLCO1A2 24 110 108 CCDS HistoryNCBI Gene:6579Re-query CCDS DB by CCDS ID:8686.1Re-query CCDS DB by GeneID:6579See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307378.10 ENSP00000305974.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307378.10Link to Ensembl Protein Viewer:ENSP00000305974.6Re-query CCDS DB by Nucleotide ID:ENST00000307378Re-query CCDS DB by Protein ID:ENSP00000305974
Original member Current member EBI ENST00000683939.1 ENSP00000508235.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683939.1Link to Ensembl Protein Viewer:ENSP00000508235.1Re-query CCDS DB by Nucleotide ID:ENST00000683939Re-query CCDS DB by Protein ID:ENSP00000508235
Original member Current member NCBI NM_001386878.1 NP_001373807.1 Accepted alive Link to Nucleotide Sequence:NM_001386878.1Link to Protein Sequence:NP_001373807.1Re-query CCDS DB by Nucleotide ID:NM_001386878Re-query CCDS DB by Protein ID:NP_001373807Link to BLAST:NP_001373807.1
Original member Current member NCBI NM_001386879.1 NP_001373808.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386879.1Link to Protein Sequence:NP_001373808.1Re-query CCDS DB by Nucleotide ID:NM_001386879Re-query CCDS DB by Protein ID:NP_001373808Link to BLAST:NP_001373808.1
Original member Current member NCBI NM_001386880.1 NP_001373809.1 Accepted alive Link to Nucleotide Sequence:NM_001386880.1Link to Protein Sequence:NP_001373809.1Re-query CCDS DB by Nucleotide ID:NM_001386880Re-query CCDS DB by Protein ID:NP_001373809Link to BLAST:NP_001373809.1
Original member Current member NCBI NM_001386881.1 NP_001373810.1 Accepted alive Link to Nucleotide Sequence:NM_001386881.1Link to Protein Sequence:NP_001373810.1Re-query CCDS DB by Nucleotide ID:NM_001386881Re-query CCDS DB by Protein ID:NP_001373810Link to BLAST:NP_001373810.1
Original member Current member NCBI NM_001386882.2 NP_001373811.1 Accepted alive Link to Nucleotide Sequence:NM_001386882.2Link to Protein Sequence:NP_001373811.1Re-query CCDS DB by Nucleotide ID:NM_001386882Re-query CCDS DB by Protein ID:NP_001373811Link to BLAST:NP_001373811.1
Original member Current member NCBI NM_021094.4 NP_066580.1 Accepted alive Link to Nucleotide Sequence:NM_021094.4Link to Protein Sequence:NP_066580.1Re-query CCDS DB by Nucleotide ID:NM_021094Re-query CCDS DB by Protein ID:NP_066580Link to BLAST:NP_066580.1
Original member Current member NCBI NM_134431.5 NP_602307.1 Accepted alive Link to Nucleotide Sequence:NM_134431.5Link to Protein Sequence:NP_602307.1Re-query CCDS DB by Nucleotide ID:NM_134431Re-query CCDS DB by Protein ID:NP_602307Link to BLAST:NP_602307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373807.1 670 P46721-1 670 100% 0 0
NP_001373808.1 670 P46721-1 670 100% 0 0
NP_001373809.1 670 P46721-1 670 100% 0 0
NP_001373810.1 670 P46721-1 670 100% 0 0
NP_001373811.1 670 P46721-1 670 100% 0 0
NP_066580.1 670 P46721-1 670 100% 0 0
NP_602307.1 670 P46721-1 670 100% 0 0

Chromosomal Locations for CCDS 8686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 21269548 21269767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21274469 21274586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21275360 21275424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21292164 21292336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21293945 21294110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21295597 21295792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21297404 21297568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21300348 21300569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21301171 21301269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21304427 21304573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21306882 21306988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21314549 21314681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21318782 21318923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21334588 21334647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGGAGAAACTGAGAAAAGAATTGAAACCCATAGAATAAGATGTCTTTCCAAGTTGAAGATGTTTCTGT
TGGCAATAACATGTGCATTTGTATCCAAAACACTGTCTGGATCTTATATGAATTCCATGCTCACACAAAT
AGAGAGACAATTCAACATCCCAACATCTCTAGTTGGATTCATTAATGGAAGCTTTGAGATTGGAAATCTT
TTGTTGATTATATTTGTGAGTTATTTTGGAACCAAACTGCATAGACCTATAATGATTGGCATTGGATGTG
TGGTTATGGGCTTAGGCTGTTTCTTAAAATCACTACCTCATTTCCTCATGAACCAATATGAATATGAATC
TACAGTTTCAGTTTCAGGCAACTTGTCCTCAAACAGTTTCTTGTGTATGGAAAATGGAACCCAGATTTTA
AGACCAACGCAGGATCCATCAGAGTGTACAAAGGAAGTTAAATCATTAATGTGGGTGTACGTCCTAGTAG
GCAATATTGTACGTGGAATGGGTGAAACTCCCATCCTGCCTTTGGGTATTTCCTATATAGAAGATTTTGC
CAAATTTGAAAATTCTCCTTTATATATTGGGCTTGTAGAAACAGGAGCTATTATTGGTCCTTTGATTGGA
CTTTTGTTGGCATCATTCTGTGCAAATGTTTATGTTGACACTGGATTTGTGAACACAGATGATCTGATCA
TAACTCCCACTGACACTCGTTGGGTCGGTGCATGGTGGTTTGGCTTTCTGATTTGTGCAGGAGTTAACGT
GCTCACTGCCATTCCTTTTTTCTTTTTGCCCAACACACTTCCAAAGGAAGGACTAGAGACTAATGCTGAC
ATCATTAAAAATGAAAATGAAGACAAACAAAAAGAAGAGGTCAAGAAGGAAAAATATGGAATCACTAAAG
ATTTTCTACCTTTCATGAAAAGTCTTTCCTGCAATCCAATTTATATGCTTTTCATACTTGTAAGTGTGAT
ACAGTTCAATGCATTCGTTAACATGATCTCCTTCATGCCTAAATACCTAGAACAGCAATATGGAATATCA
TCTTCAGATGCAATCTTTCTAATGGGTATTTATAACTTACCTCCAATATGTATTGGATATATAATTGGTG
GTTTAATTATGAAGAAGTTCAAGATTACTGTCAAACAAGCTGCCCACATAGGATGTTGGTTATCCTTACT
TGAGTATCTTCTCTATTTTTTATCTTTTCTCATGACTTGTGAAAATTCTTCAGTTGTTGGAATAAATACC
TCTTATGAAGGAATTCCACAAGATTTATATGTGGAAAATGACATCTTTGCTGATTGCAATGTGGATTGCA
ACTGTCCATCTAAAATATGGGATCCTGTGTGTGGAAACAATGGCTTGTCATATCTGTCAGCTTGTCTTGC
TGGTTGTGAGACATCCATTGGAACGGGAATAAACATGGTGTTCCAAAATTGCAGCTGTATTCAAACATCA
GGAAATTCATCTGCAGTTCTTGGGCTGTGCGACAAAGGACCTGACTGTTCCTTGATGCTCCAGTACTTCC
TAATCTTGTCAGCGATGAGCAGTTTCATTTATTCTTTGGCTGCCATACCTGGATATATGGTTCTCTTGAG
GTGTATGAAATCTGAAGAGAAGTCCCTTGGTGTGGGATTACATACATTTTGCACAAGAGTATTTGCTGGC
ATTCCTGCACCTATATATTTTGGCGCTTTAATGGATTCCACATGTTTACACTGGGGAACTTTGAAATGTG
GTGAGTCAGGGGCATGCAGGATATATGATTCCACCACCTTCAGATACATCTACCTCGGATTGCCGGCAGC
ACTAAGAGGATCAAGCTTTGTTCCAGCCTTAATCATCTTAATTCTTTTGAGGAAGTGTCATCTACCTGGT
GAAAATGCCTCTTCAGGAACAGAGCTTATAGAGACAAAAGTCAAAGGGAAGGAAAATGAGTGCAAAGATA
TATACCAAAAGTCCACGGTTTTGAAAGATGATGAATTGAAAACTAAATTGTAA

Translation (670 aa):
MGETEKRIETHRIRCLSKLKMFLLAITCAFVSKTLSGSYMNSMLTQIERQFNIPTSLVGFINGSFEIGNL
LLIIFVSYFGTKLHRPIMIGIGCVVMGLGCFLKSLPHFLMNQYEYESTVSVSGNLSSNSFLCMENGTQIL
RPTQDPSECTKEVKSLMWVYVLVGNIVRGMGETPILPLGISYIEDFAKFENSPLYIGLVETGAIIGPLIG
LLLASFCANVYVDTGFVNTDDLIITPTDTRWVGAWWFGFLICAGVNVLTAIPFFFLPNTLPKEGLETNAD
IIKNENEDKQKEEVKKEKYGITKDFLPFMKSLSCNPIYMLFILVSVIQFNAFVNMISFMPKYLEQQYGIS
SSDAIFLMGIYNLPPICIGYIIGGLIMKKFKITVKQAAHIGCWLSLLEYLLYFLSFLMTCENSSVVGINT
SYEGIPQDLYVENDIFADCNVDCNCPSKIWDPVCGNNGLSYLSACLAGCETSIGTGINMVFQNCSCIQTS
GNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGYMVLLRCMKSEEKSLGVGLHTFCTRVFAG
IPAPIYFGALMDSTCLHWGTLKCGESGACRIYDSTTFRYIYLGLPAALRGSSFVPALIILILLRKCHLPG
ENASSGTELIETKVKGKENECKDIYQKSTVLKDDELKTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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