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Report for CCDS43990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43990.1 Public Homo sapiens X STAG2 24 110 108 CCDS HistoryNCBI Gene:10735Re-query CCDS DB by CCDS ID:43990.1Re-query CCDS DB by GeneID:10735See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218089.13 ENSP00000218089.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000218089.13Link to Ensembl Protein Viewer:ENSP00000218089.9Re-query CCDS DB by Nucleotide ID:ENST00000218089Re-query CCDS DB by Protein ID:ENSP00000218089
Original member Current member EBI ENST00000371145.8 ENSP00000360187.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371145.8Link to Ensembl Protein Viewer:ENSP00000360187.4Re-query CCDS DB by Nucleotide ID:ENST00000371145Re-query CCDS DB by Protein ID:ENSP00000360187
Original member Current member EBI ENST00000687852.1 ENSP00000509048.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687852.1Link to Ensembl Protein Viewer:ENSP00000509048.1Re-query CCDS DB by Nucleotide ID:ENST00000687852Re-query CCDS DB by Protein ID:ENSP00000509048
Original member Current member NCBI NM_001042749.2 NP_001036214.1 Accepted alive Link to Nucleotide Sequence:NM_001042749.2Link to Protein Sequence:NP_001036214.1Re-query CCDS DB by Nucleotide ID:NM_001042749Re-query CCDS DB by Protein ID:NP_001036214Link to BLAST:NP_001036214.1
Original member Current member NCBI NM_001042750.2 NP_001036215.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042750.2Link to Protein Sequence:NP_001036215.1Re-query CCDS DB by Nucleotide ID:NM_001042750Re-query CCDS DB by Protein ID:NP_001036215Link to BLAST:NP_001036215.1
Original member Current member NCBI NM_001375366.1 NP_001362295.1 Accepted alive Link to Nucleotide Sequence:NM_001375366.1Link to Protein Sequence:NP_001362295.1Re-query CCDS DB by Nucleotide ID:NM_001375366Re-query CCDS DB by Protein ID:NP_001362295Link to BLAST:NP_001362295.1
Original member Current member NCBI NM_001375367.1 NP_001362296.1 Accepted alive Link to Nucleotide Sequence:NM_001375367.1Link to Protein Sequence:NP_001362296.1Re-query CCDS DB by Nucleotide ID:NM_001375367Re-query CCDS DB by Protein ID:NP_001362296Link to BLAST:NP_001362296.1
Original member Current member NCBI NM_001375368.1 NP_001362297.1 Accepted alive Link to Nucleotide Sequence:NM_001375368.1Link to Protein Sequence:NP_001362297.1Re-query CCDS DB by Nucleotide ID:NM_001375368Re-query CCDS DB by Protein ID:NP_001362297Link to BLAST:NP_001362297.1
Original member Current member NCBI NM_001375369.1 NP_001362298.1 Accepted alive Link to Nucleotide Sequence:NM_001375369.1Link to Protein Sequence:NP_001362298.1Re-query CCDS DB by Nucleotide ID:NM_001375369Re-query CCDS DB by Protein ID:NP_001362298Link to BLAST:NP_001362298.1
Original member Current member NCBI NM_001375370.1 NP_001362299.1 Accepted alive Link to Nucleotide Sequence:NM_001375370.1Link to Protein Sequence:NP_001362299.1Re-query CCDS DB by Nucleotide ID:NM_001375370Re-query CCDS DB by Protein ID:NP_001362299Link to BLAST:NP_001362299.1
Original member Current member NCBI NM_001375371.1 NP_001362300.1 Accepted alive Link to Nucleotide Sequence:NM_001375371.1Link to Protein Sequence:NP_001362300.1Re-query CCDS DB by Nucleotide ID:NM_001375371Re-query CCDS DB by Protein ID:NP_001362300Link to BLAST:NP_001362300.1
Original member Current member NCBI NM_001375372.1 NP_001362301.1 Accepted alive Link to Nucleotide Sequence:NM_001375372.1Link to Protein Sequence:NP_001362301.1Re-query CCDS DB by Nucleotide ID:NM_001375372Re-query CCDS DB by Protein ID:NP_001362301Link to BLAST:NP_001362301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036214.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001036215.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362295.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362296.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362297.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362298.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362299.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362300.1 1268 Q8N3U4-2 1268 100% 0 0
NP_001362301.1 1268 Q8N3U4-2 1268 100% 0 0

Chromosomal Locations for CCDS 43990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 124022628 124022671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124025840 124025918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124030961 124031125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124037527 124037623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124042569 124042645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124045164 124045368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124047354 124047505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124049005 124049078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124050186 124050309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124051121 124051219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124051315 124051394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124056128 124056235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124057866 124057977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124061224 124061341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124061771 124061874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124062902 124062994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124063116 124063205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124063848 124064051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124065876 124065946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124066175 124066262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124066356 124066436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124068564 124068656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124071149 124071323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124076332 124076471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124077957 124078058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124081380 124081528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124083421 124083549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124086547 124086770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124090575 124090764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124090854 124090964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124094018 124094144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124095372 124095449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124100574 124100597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3807 nt):
ATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTG
ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAA
AAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATG
AATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTG
CTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCT
TATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAG
AACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGG
CTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCA
ATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCA
CAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGG
CACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGG
AAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAA
ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAA
TTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAG
TTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCT
CTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATA
GAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGT
TTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCT
CACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGG
AGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTT
CTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAG
CTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAA
CAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCC
TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGG
ACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAA
AGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAA
GCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAA
GCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAA
GAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGA
AGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCC
CATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAG
ACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAA
GATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAG
ATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATA
TTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCC
TGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGAT
AATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATT
TACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAA
ACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATA
GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAA
ATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTT
AACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTT
GCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGA
GTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGAC
CTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCT
GGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAA
AATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCACTGAAGAAAGTAG
TAGTAGTGACAGTATGTGGTTAAGCAGAGAACAAACACTGCACACCCCTGTTATGATGCAGACACCACAA
CTCACCTCCACTATTATGAGAGAGCCCAAAAGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAA
TGCAGACTGAACATCATCAAACACCTCTTGATTATAACACGCAGGTAACATGGATGTTAGCTCAAAGACA
ACAAGAGGAAGCAAGGCAACAGCAGGAGAGAGCAGCAATGAGCTATGTTAAACTGCGAACTAATCTTCAG
CATGCCATTCGGCGTGGCACAAGCCTAATGGAAGATGATGAAGAGCCAATTGTGGAAGATGTTATGATGT
CCTCAGAAGGGAGGATTGAGGATCTTAATGAGGGAATGGATTTTGACACCATGGATATAGATTTGCCACC
ATCAAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCTTTGATCCAGCTTCAATTATGGATGAA
TCAGTTCTTGGAGTGTCAATGTTTTAA

Translation (1268 aa):
MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRM
NGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQ
NSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDS
QVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDE
IENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTA
LQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSA
HRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATE
LLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDR
TKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE
ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNA
HDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQ
ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDD
NNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQI
DKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEF
AFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLA
GGDDDTMSVISGISSRGSTVRSKKSKPSTGKRKVVEGMQLSLTEESSSSDSMWLSREQTLHTPVMMQTPQ
LTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQ
HAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDE
SVLGVSMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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