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Report for CCDS42718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42718.1 Public Homo sapiens 2 VWA3B 24 110 108 CCDS HistoryNCBI Gene:200403Re-query CCDS DB by CCDS ID:42718.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000477737.6 ENSP00000417955.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000477737.6Link to Ensembl Protein Viewer:ENSP00000417955.1Re-query CCDS DB by Nucleotide ID:ENST00000477737Re-query CCDS DB by Protein ID:ENSP00000417955
Original member Current member NCBI NM_144992.5 NP_659429.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144992.5Link to Protein Sequence:NP_659429.4Re-query CCDS DB by Nucleotide ID:NM_144992Re-query CCDS DB by Protein ID:NP_659429Link to BLAST:NP_659429.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659429.4 1294 Q502W6-1 1294 100% 0 0

Chromosomal Locations for CCDS 42718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 98093093 98093288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98115652 98115746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98119513 98119763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98121299 98121458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98128239 98128408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98133824 98133939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98162851 98162976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98181016 98181212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98187975 98188129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98192898 98193036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98194361 98194492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98211930 98212028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98217846 98218028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98228202 98228332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98230050 98230207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98234648 98234767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98236390 98236477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98236574 98236730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98250318 98250436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98256124 98256174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98270682 98270883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98290511 98290622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98297907 98298031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98300079 98300216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98303702 98303802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98311819 98312032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98312200 98312349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3885 nt):
ATGGAGAAATCAGGCCCATCTTCTACCATCTCTGAGCAGCAGCTGCAGAGGCAAGAGGGATGGATTAACA
CCAAAACAGACTTGGCTGAGCAGAGTCTCATTTCATCTGAGAAATGGCTTCAACTGCATGGGCTTAAGAG
CAACAAATTGACCTTGAAACAGATTTTGTCACAGATCGGATTCCCACATTGTGAAGATTATGTGGCGTCT
CTGGGGAGACCTGTGGCTTCTCGGTATGCTGATGGTCTGTTTCCACAGCTCTACAGAGCAGAAGATGGCA
GAGTATACAATCTGACAGCTAAATCAGAACTGATTTATCAGTTTGTGGAACATTTAACACAAGCTGTGGA
GAGCTACAAGCAGCGAATGGACTGGCTCACCAGCAAGAGCCGGCAGATTTTTGGTGTCATCTTGGAACAG
TGCGTCACCATAGTGCTGGATTTTGGCGGCATTCTGGAGGGGGAGCTTGATCTGTGCCGAGAGGCTCTAA
CAATGGTTCTCCAGGAGCAGGTGGCTCACATAACCGAGTTCAATATCATACGGGTTTCTCAAGAGCCTGT
GAAGTGGCAGGAAAATGCTACTCCTGTGACCGAACAGTCCATAGCTACTGCCATCAGTTGGGTTGAGAAA
CTGACGGTTGAGCTGACTGTGAGCGAGGCTGGCCGCCTGGATGCTCTGCTGGAAGCCGGGAGAGACAAGA
CTATTGAATCCATTTACTACTTTGTGGTGGGGGATGTTCCTGAAGAATCCAAGGAGCTTCTCCTCCAGAG
GGCCTTGGAGATCCCGTGTCCAGTCTACACAGTGTCCTTCAACGCCAGAGGAGAAGGCACTATAGCTTTT
CTAAAGGATCTGAGTGCCAAGACCCACAGCAGATTCCACGCATTTGCCGAGAGAACAGAGTGTGTAGAAT
TTCCTGCATTCTCCACAAAGGATGGTGACAATGTGATGACTTGGAATTCAAGGAAACTGAAAGGAAAACT
CCCTCCAGGAGCTGGAGTCAGAGAGGACGTGTTTCTCGTTTGGCAAGAGATGGAGGAAGCCTGCAGCACG
CTGGCCCAGATCCAGAGGCTGGTGGCCGAGCCTCCCAAGCCCGACGTGGCCACTGTGGACTGCGAGTCAG
AAACAACCTCTGTTGAGATTGCATCGAATCCAGAAGACACCTGGGACTCTAAGACATGGCTGCAGAAATA
TGGCTTGAAGGCCCAGAAGCTATCCTTGTATGATGTGCTTGCCGACTGCTCTTTCCGCCACGCTGATGGG
GTTGTGGATATAAAAGCCAAACCGGAGAATGAGTCCGTGCAGACCAGTGCGGAGACGAACAAGAAGACAG
TCCATGCAAAATATTGCAGCAGGTTTGTCCATGCTCCCTGGAAGGATGGGAGCTTGGTCCACGTCAACAT
TACCAAAGAGAAGTGCAAGTGGTACAGTGAGAGAATCCACACAGCCCTGGCCCGGATCCGAAGGAGGATT
AAATGGCTACAGGATGGGAGTCAAAGCCTCTTTGGAAGATTGCATAATGATTGCATCTACATTCTCATTG
ACACGTCTCACTCAATGAAGAGCAAACTGGACTTGGTGAAGGACAAGATCATTCAGTTCATACAGGAACA
GCTGAAATATAAAAGTAAGTTTAACTTTGTGAAGTTTGATGGTCAAGCAGTTGCTTGGCGGGAACAACTT
GCTGAAGTCAATGAAGATAATTTGGAACAGGCTCAGTCCTGGATTAGAGACATAAAGATTGGAAGCTCCA
CAAACACCCTGAGTGCCCTGAAAACTGCTTTTGCTGATAAAGAAACACAGGCAATCTACCTTCTGACCGA
TGGGAGACCTGATCAGCCACCTGAAACAGTTATAGACCAGGTCAAACGTTTTCAGGAAATTCCTATTTAT
ACCATCTCCTTCAATTACAATGATGAGATTGCAAACAGGTTTTTGAAAGAGGTTGCTGCTTTGACTGGAG
GAGAGTTCCATTTTTATAATTTTGGTTGCAAGGATCCCACTCCCCCAGAGGCTGTTCAGAATGAAGATCT
GACTCTTTTAGTTAAGGAAATGGAACAGGGTCACAGTGATCTGGAGAAGATGCAAGACCTTTATTCTGAG
TCCTTGATCATGGACTGGTGGTACAATGCAGAAAAGGATGGAGACAGCAAGCATCAAAAGGAAATCTGTT
CTATGATTTCAACCCCAGAAAAGTGTGCAAAGCCTCAATCTGATGTCGATTCAACACAAACTTCATCTCT
GAATATGTTGAAGGGACCATGGGGCCTTTCAGATCAAAAGGTTCAGAAAAAGAAAGTCCTTCACGCAGAA
TCAACCAAAACCAGCCTGCTCAGAAGCCAGATGTCCTCCCTCAGGAGCTCAGCTTGCAGTGAAAGGAAGG
ATGGCCTCTCCAATGCCAGCAGCCGGAGGACTGCTCTAAGTGACAAAGAAATGAGCATCTTGCTGGCTGA
GGAGTGGCTGGATGACAAATCGTCAGAAAAGGTGACGCGAGAAGGAAGCCAGGTTTATGACCACGATTCT
TCAGATGTGTCTTCAGAAAACTGGCTGAAGACCTATGGCTTGGTCGCCAAGAAACTCACCCTCATGGATG
CCTTGTCAGTGGCAGCAGTCCCGCACAGCTCCACCTATGTTCCCGTCCTGGACAAGCATGTCGTGTCTAA
GGTCTTTGATGAGGTGTTCCCTCTGGCACATGTGTGCAACGACACAAATAAGATGACATTAATTAACCCC
CAAGGAGCCAAACTCAATATCTACAAGCGAAAAGTGGAACAGGCAATTCAATCCTATGAAAAGCGCTTGA
ATAAAATTGTTTGGCGAGCATTATCTCAAGAGGAAAAAGAAAAGTTAGATGCAAACAAACCAATACAGTA
CTTGGAAAACAAAACAGTTTTAAACCAGGCTTTAGAACGGTTGAATTGGCCCATTTCACTGAAAGAGCTG
TCGATGCTGGAAAGTGAAATCCTAGCTGGGAAAATGTACATCCAGCAGGCCATGGAACTCCAGGAGGCTG
CCAAGAAGAATTATGCAAACAAGGCCCCGGGAGAGCAACAGAAATTGCAAGGAAATCCAACAAAGAAAAC
CAAATCAAAAAGACCAGATCCCCTCAAAGGACAGAAGGTTATTGCAAGATGTGATGAAAATGGCTTTTAT
TTTCCAGGGGTTGTGAAGAAGTGTGTGAGCCGCACCCAAGCACTGGTGGGCTTCAGTTACGGAGACACCA
AGGTCGTGTCCACCTCCTTCATCACGCCTGTGGGGGGCGCCATGCCCTGCCCGCTGCTCCAGGTTGGAGA
TTATGTGTTTGCCAAAATTGTGATACCCAAAGGATTTGACTTCTATGTCCCTGCCATTGTCATAGCACTT
CCCAATAAGCATGTGGCCACAGAAAAATTCTACACAGTTTTGAAGTGTAACAACCGGAGAGAATTTTGCC
CTCGGAGTGCACTTATTAAGATCAGCCAAAACAAGTATGCGCTCTCTTGCTCTCATATAAAGTCACCCCC
AATTCCTGAGGATCCAGAAGTAGAGGATGTGGAGGCGAGGAACTCTGCTTTCCTCTTCTGGCCACTGAAA
GAAGCGGACACGCAGGATTCCAGAGAGCCAAGACGAGAGAAGCCCAGGAGGAAAAAGAGGCCCGCCAAGC
AGCCACTCCAGCAGGCGGCGCCCTCGGACTCGGACGGCTCCTCCCACGGCATCAGCTCCCATGGGTCCTG
CCAGGGGACACACCCCGAGCCCAGGACAGCCCACCTCCACTTCCCCGCGGCCGGGCGTCTAGGACTCAGC
AGCCACGCCATCATTGCCACACCTCCACCTCGAGCAGCCCTGCCCTGTACTCTCCAAGCCACCCACAGCA
GCAAAGGGCTGAGGAGCGTCCCTGAGACACTTTAA

Translation (1294 aa):
MEKSGPSSTISEQQLQRQEGWINTKTDLAEQSLISSEKWLQLHGLKSNKLTLKQILSQIGFPHCEDYVAS
LGRPVASRYADGLFPQLYRAEDGRVYNLTAKSELIYQFVEHLTQAVESYKQRMDWLTSKSRQIFGVILEQ
CVTIVLDFGGILEGELDLCREALTMVLQEQVAHITEFNIIRVSQEPVKWQENATPVTEQSIATAISWVEK
LTVELTVSEAGRLDALLEAGRDKTIESIYYFVVGDVPEESKELLLQRALEIPCPVYTVSFNARGEGTIAF
LKDLSAKTHSRFHAFAERTECVEFPAFSTKDGDNVMTWNSRKLKGKLPPGAGVREDVFLVWQEMEEACST
LAQIQRLVAEPPKPDVATVDCESETTSVEIASNPEDTWDSKTWLQKYGLKAQKLSLYDVLADCSFRHADG
VVDIKAKPENESVQTSAETNKKTVHAKYCSRFVHAPWKDGSLVHVNITKEKCKWYSERIHTALARIRRRI
KWLQDGSQSLFGRLHNDCIYILIDTSHSMKSKLDLVKDKIIQFIQEQLKYKSKFNFVKFDGQAVAWREQL
AEVNEDNLEQAQSWIRDIKIGSSTNTLSALKTAFADKETQAIYLLTDGRPDQPPETVIDQVKRFQEIPIY
TISFNYNDEIANRFLKEVAALTGGEFHFYNFGCKDPTPPEAVQNEDLTLLVKEMEQGHSDLEKMQDLYSE
SLIMDWWYNAEKDGDSKHQKEICSMISTPEKCAKPQSDVDSTQTSSLNMLKGPWGLSDQKVQKKKVLHAE
STKTSLLRSQMSSLRSSACSERKDGLSNASSRRTALSDKEMSILLAEEWLDDKSSEKVTREGSQVYDHDS
SDVSSENWLKTYGLVAKKLTLMDALSVAAVPHSSTYVPVLDKHVVSKVFDEVFPLAHVCNDTNKMTLINP
QGAKLNIYKRKVEQAIQSYEKRLNKIVWRALSQEEKEKLDANKPIQYLENKTVLNQALERLNWPISLKEL
SMLESEILAGKMYIQQAMELQEAAKKNYANKAPGEQQKLQGNPTKKTKSKRPDPLKGQKVIARCDENGFY
FPGVVKKCVSRTQALVGFSYGDTKVVSTSFITPVGGAMPCPLLQVGDYVFAKIVIPKGFDFYVPAIVIAL
PNKHVATEKFYTVLKCNNRREFCPRSALIKISQNKYALSCSHIKSPPIPEDPEVEDVEARNSAFLFWPLK
EADTQDSREPRREKPRRKKRPAKQPLQQAAPSDSDGSSHGISSHGSCQGTHPEPRTAHLHFPAAGRLGLS
SHAIIATPPPRAALPCTLQATHSSKGLRSVPETL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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