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Report for CCDS34079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34079.1 Public Homo sapiens 4 TIGD4 24 110 108 CCDS HistoryNCBI Gene:201798Re-query CCDS DB by CCDS ID:34079.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304337.3 ENSP00000355162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304337.3Link to Ensembl Protein Viewer:ENSP00000355162.2Re-query CCDS DB by Nucleotide ID:ENST00000304337Re-query CCDS DB by Protein ID:ENSP00000355162
Original member Current member NCBI NM_145720.4 NP_663772.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145720.4Link to Protein Sequence:NP_663772.1Re-query CCDS DB by Nucleotide ID:NM_145720Re-query CCDS DB by Protein ID:NP_663772Link to BLAST:NP_663772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663772.1 512 Q8IY51 512 100% 0 0

Chromosomal Locations for CCDS 34079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152769466 152771004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGCAGAAGCTTCTGTGGATGCCTCAACTCTGCCTGTAACAGTGAAGAAAAAGAAAAGCCTATCCATTG
AGGAAAAGATCGACATCATAAATGCAGTGGAAAGTGGCAAGAAAAAAGCAGAGATTGCTGCTGAATATGG
AATAAAGAAAAATTCATTGTCTTCTATTATGAAGAATAAAGACAAAGTTCTAGAAGCCTTTGAATCTCTA
AGATTTGATCCAAAGAGAAAAAGACTGAGAACTGCTTTTTACACAGATCTGGAAGAGGCATTAATGAGAT
GGTATCGAATTGCTCAGTGTCTAAATGTACCAGTTAATGGTCCGATGTTACGTCTAAAAGCTAATGATTT
TGCCCAGAAACTGGGCCATAATGATTTTAAGTGCAGTAATGGTTGGCTGGATCGTTTTAAATCCAGGTAT
GGTTTAGTATTCAGAGCTCAACCTGTAGAAGCTACAGGTGTACCAGTAGACCCTTCGACTGTCTGGTACC
AAAATGTACTTCCTTATTATTTAAATGATTATCATCCTAAAAATGTTTTTAATATAAAAGAGACTGGGCT
GCTTTATCGAATGTTACCTACCAATACATTTGCATTTAAAGGCGAAACATGTTCAGTTGGAAAGTTATGC
AAAGACAGAATAACTCTGGTGGTTGGCACAAACATGGATGGCTCAGAGAAACTTCCTTTGCTTGTCATTG
GAAAAAAGAGAACTCCACATTGTTTCAAAGGTTTAAAATCATTGCCTGTGTGTTATGAAGCTAACAGAAT
GGCATGGATGACCTCCGATGTATTTGAACAATGGATGCGAAAGCTTGATGAGGAATTTCAAGCCCAGCAA
CGAAGAGTGGTGATTTTTGTTGAGTCTTTTCCAGCACATCCAGAGGTAAAGAACCTAAAATCCATTGAGT
TAGCATTCTTTCCATCATGTTTATCTTCCAAATGTATAGCTATGAAACAAGGTGTTATTAAAAGCCTTAA
AATCAAATATCGACACTGTCTTATCAAGAAATTTTTAAGCTCTGTTGAAGGTAGCAAAGAATTTACATTT
TCACTACTAGATGCAGTTGATACATTGCATCTTTGCTGGAGGGCTGTAACCCCAGAGACTATTGTTAAAA
GCTATGAAGAGGCAGGATTCAAATCTCAAAAGGGAGAAAGTGACATAACAAATGCAGAGAAGGATACTGG
TCTGGATTTGGTTGCTGATGCTCTGGGGGCAGGAGTAGAATTTCCTGAAGGTTTATCTATAGAAGAATAT
GCTGCCCTGGATGATGATTTGGAGACATGTGAAGCAGCACCAAATGGTGATTCCATATGCACCAAAGAAA
GTAAATCGGATGAAACTGGATTTTACACTTCTGATGAAGAGGATGATGATGGATCTCCAGGAACTGAACT
CCCTTTACCATCAAAATCTGAGGCAATAACTGCTTTAGATACTCTGAAAAAATTTCTCAGAAGTCAAGAT
ATGAATGACGGACTTCAAAATTCTTTAGCAGACCTTGAAAATTTTATTAACTCTTTATCACCTAAGTAA

Translation (512 aa):
MAEASVDASTLPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESL
RFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRY
GLVFRAQPVEATGVPVDPSTVWYQNVLPYYLNDYHPKNVFNIKETGLLYRMLPTNTFAFKGETCSVGKLC
KDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKSLPVCYEANRMAWMTSDVFEQWMRKLDEEFQAQQ
RRVVIFVESFPAHPEVKNLKSIELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEFTF
SLLDAVDTLHLCWRAVTPETIVKSYEEAGFKSQKGESDITNAEKDTGLDLVADALGAGVEFPEGLSIEEY
AALDDDLETCEAAPNGDSICTKESKSDETGFYTSDEEDDDGSPGTELPLPSKSEAITALDTLKKFLRSQD
MNDGLQNSLADLENFINSLSPK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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