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Report for CCDS7947.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7947.2 Public Homo sapiens 11 TRIM48 24 110 108 CCDS HistoryNCBI Gene:79097Re-query CCDS DB by CCDS ID:7947.2Re-query CCDS DB by GeneID:79097See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 7947.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7947.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417545.5 ENSP00000402414.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417545.5Link to Ensembl Protein Viewer:ENSP00000402414.2Re-query CCDS DB by Nucleotide ID:ENST00000417545Re-query CCDS DB by Protein ID:ENSP00000402414
Original member Current member NCBI NM_024114.5 NP_077019.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024114.5Link to Protein Sequence:NP_077019.2Re-query CCDS DB by Nucleotide ID:NM_024114Re-query CCDS DB by Protein ID:NP_077019Link to BLAST:NP_077019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077019.2 224 Q8IWZ4 224 100% 0 0

Chromosomal Locations for CCDS 7947.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55262268 55262311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55264900 55265314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55265600 55265695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55268350 55268372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55269242 55269338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCTCGAAGAATCATTGTGGGAACCCTTCAAAGAACCCAGCGAAACATGAATTCTGGAATCTCGCAAG
TCTTCCAGAGGGAACTCACCTGCCCCATCTGCATGAACTACTTCATAGACCCGGTCACCATAGACTGTGG
GCACAGCTTTTGCAGGCCCTGTTTCTACCTCAACTGGCAAGACATCCCAATTCTTACTCAGTGCTTTGAA
TGCATAAAGACAATACAGCAGAGAAACCTCAAAACTAACATTCGATTGAAGAAGATGGCTTCCCTTGCCA
GAAAAGCCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTGGCATTCACAGGGAGACAAAGAA
GATGTTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAGCTCTCAGGAGCACCGGTATCAC
AGACACTGTCCCGCTGAGTGGGCTGCTGAGGAACACTGGGAGAAGCTTTTAAAGAAAATGCAGTCTTTAT
GGGAAAAAGCTTGTGAAAATCAGAGAAACCTGAATGTGGAAACCACCAGAATCAGCCACTGGAAGGCTTT
TGGAGACATATTATACAGGAGTGAGTCCGTGCTGCTGCACATGCCCCAGCCTCTGAATCTAGCGCTCAGG
GCAGGGCCCATCACTGGACTGAGGGACAGGCTCAACCAATTCTGA

Translation (224 aa):
MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFE
CIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQEHRYH
RHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSESVLLHMPQPLNLALR
AGPITGLRDRLNQF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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