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Report for CCDS2224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2224.1 Public Homo sapiens 2 SLC38A11 24 110 108 CCDS HistoryNCBI Gene:151258Re-query CCDS DB by CCDS ID:2224.1Re-query CCDS DB by GeneID:151258See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303735.8 ENSP00000306178.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303735.8Link to Ensembl Protein Viewer:ENSP00000306178.4Re-query CCDS DB by Nucleotide ID:ENST00000303735Re-query CCDS DB by Protein ID:ENSP00000306178
Original member Current member NCBI NM_173512.3 NP_775783.1 Accepted alive Link to Nucleotide Sequence:NM_173512.3Link to Protein Sequence:NP_775783.1Re-query CCDS DB by Nucleotide ID:NM_173512Re-query CCDS DB by Protein ID:NP_775783Link to BLAST:NP_775783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775783.1 384 Q08AI6-2 384 100% 0 0

Chromosomal Locations for CCDS 2224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164898437 164898730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164908640 164908771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164911636 164911748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915112 164915273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915903 164915973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164937350 164937429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164939450 164939556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164945593 164945727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164952707 164952767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGAAGCAAGCTGGGTTTCCTTTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAGACTTTTCCC
TTGTTTTATTGATAAAAGGAGGGGCCCTCTCTGGAACAGATACCTACCAGTCTTTGGTCAATAAAACTTT
CGGCTTTCCAGGGTATCTGCTCCTCTCTGTTCTTCAGTTTTTGTATCCTTTTATAGTTGATCCTGAAAAC
GTGTTTATTGGTCGCCACTTCATTATTGGACTTTCCACAGTTACCTTTACTCTGCCTTTATCCTTGTACC
GAAATATAGCAAAGCTTGGAAAGGTCTCCCTCATCTCTACAGGTTTAACAACTCTGATTCTTGGAATTGT
AATGGCAAGGGCAATTTCACTGGGTCCACACATACCAAAAACAGAAGACGCTTGGGTATTTGCAAAGCCC
AATGCCATTCAAGCGGTCGGGGTTATGTCTTTTGCATTTATTTGCCACCATAACTCCTTCTTAGTTTACA
GTTCTCTAGAAGAACCCACAGTAGCTAAGTGGTCCCGCCTTATCCATATGTCCATCGTGATTTCTGTATT
TATCTGTATATTCTTTGCTACATGTGGATACTTGACATTTACTGGCTTCACCCAAGGGGACTTATTTGAA
AATTACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTGACAT
ACCCTATGGAATGCTTTGTGACAAGAGAGGTAATTGCCAATGTGTTTTTTGGTGGGAATCTTTCATCGGT
TTTCCACATTGTTGTAACAGTGATGGTCATCACTGTAGCCACGCTTGTGTCATTGCTGATTGATTGCCTC
GGGATAGTTCTAGAACTCAATGGTGTGCTCTGTGCAACTCCCCTCATTTTTATCATTCCATCAGCCTGTT
ATCTGAAACTGTCTGAAGAACCAAGGACACACTCCGATAAGATTATGTCTTGTGTCATGCTTCCCATTGG
TGCTGTGGTGATGGTTTTTGGATTCGTCATGGCTATTACAAATACTCAAGACTGCACCCATGGGCAGGAA
ATGTTCTACTGCTTTCCTGACAATTTCTCTCTCACAAATACCTCAGAGTCTCATGTTCAGCAGACAACAC
AACTTTCTACTTTAAATATTAGTATCTTTCAATGA

Translation (384 aa):
MKQAGFPLGILLLFWVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQFLYPFIVDPEN
VFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKP
NAIQAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFE
NYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCL
GIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGAVVMVFGFVMAITNTQDCTHGQE
MFYCFPDNFSLTNTSESHVQQTTQLSTLNISIFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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