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Report for CCDS3026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3026.1 Public Homo sapiens 3 ROPN1 24 110 108 CCDS HistoryNCBI Gene:54763Re-query CCDS DB by CCDS ID:3026.1Re-query CCDS DB by GeneID:54763See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000184183.8 ENSP00000184183.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000184183.8Link to Ensembl Protein Viewer:ENSP00000184183.4Re-query CCDS DB by Nucleotide ID:ENST00000184183Re-query CCDS DB by Protein ID:ENSP00000184183
Original member Current member EBI ENST00000405845.8 ENSP00000385919.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405845.8Link to Ensembl Protein Viewer:ENSP00000385919.3Re-query CCDS DB by Nucleotide ID:ENST00000405845Re-query CCDS DB by Protein ID:ENSP00000385919
Original member Current member EBI ENST00000620893.4 ENSP00000483603.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620893.4Link to Ensembl Protein Viewer:ENSP00000483603.1Re-query CCDS DB by Nucleotide ID:ENST00000620893Re-query CCDS DB by Protein ID:ENSP00000483603
Original member Current member NCBI NM_001317774.2 NP_001304703.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317774.2Link to Protein Sequence:NP_001304703.1Re-query CCDS DB by Nucleotide ID:NM_001317774Re-query CCDS DB by Protein ID:NP_001304703Link to BLAST:NP_001304703.1
Original member Current member NCBI NM_001394217.1 NP_001381146.1 Accepted alive Link to Nucleotide Sequence:NM_001394217.1Link to Protein Sequence:NP_001381146.1Re-query CCDS DB by Nucleotide ID:NM_001394217Re-query CCDS DB by Protein ID:NP_001381146Link to BLAST:NP_001381146.1
Original member Current member NCBI NM_001394218.1 NP_001381147.1 Accepted alive Link to Nucleotide Sequence:NM_001394218.1Link to Protein Sequence:NP_001381147.1Re-query CCDS DB by Nucleotide ID:NM_001394218Re-query CCDS DB by Protein ID:NP_001381147Link to BLAST:NP_001381147.1
Original member Current member NCBI NM_001394219.1 NP_001381148.1 Accepted alive Link to Nucleotide Sequence:NM_001394219.1Link to Protein Sequence:NP_001381148.1Re-query CCDS DB by Nucleotide ID:NM_001394219Re-query CCDS DB by Protein ID:NP_001381148Link to BLAST:NP_001381148.1
Original member Current member NCBI NM_017578.5 NP_060048.2 Accepted alive Link to Nucleotide Sequence:NM_017578.5Link to Protein Sequence:NP_060048.2Re-query CCDS DB by Nucleotide ID:NM_017578Re-query CCDS DB by Protein ID:NP_060048Link to BLAST:NP_060048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304703.1 212 Q9HAT0-1 212 100% 0 0
NP_001381146.1 212 Q9HAT0-1 212 100% 0 0
NP_001381147.1 212 Q9HAT0-1 212 100% 0 0
NP_001381148.1 212 Q9HAT0-1 212 100% 0 0
NP_060048.2 212 Q9HAT0-1 212 100% 0 0

Chromosomal Locations for CCDS 3026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123969155 123969221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123970042 123970217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123975379 123975540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123976864 123976981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123980366 123980481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCTCAGACAGATAAGCCAACATGCATCCCGCCGGAGCTGCCGAAGATGCTGAAGGAGTTTGCCAAAG
CCGCCATTAGGGTGCAGCCGCAGGACCTCATCCAGTGGGCAGCCGATTATTTTGAGGCCCTGTCCCGTGG
AGAGACGCCTCCGGTGAGAGAGCGGTCTGAGCGAGTCGCTTTGTGTAACCGGGCAGAGCTAACACCTGAG
CTGTTAAAGATCCTGCATTCTCAGGTTGCTGGCAGACTGATCATCCGTGCAGAGGAGCTGGCCCAGATGT
GGAAAGTGGTGAATCTCCCAACAGATCTGTTTAATAGTGTGATGAATGTGGGTCGCTTCACGGAGGAGAT
CGAGTGGCTGAAGTTTTTAGCCCTTGCTTGCAGCGCTCTGGGAGTTACTATTACCAAAACTCTCAAGATA
GTGTGTGAGGTCTTATCATGTGACCATAATGGTGGGTCGCCCCGGATCCCGTTCAGCACCTTCCAGTTTC
TCTACACGTATATTGCCAAAGTGGATGGGGAGATCTCTGCATCACATGTCAGCAGGATGCTAAACTACAT
GGAACAGGAAGTAATTGGCCCTGATGGTATAATCACAGTGAATGACTTTACCCAAAACCCCAGGGTTCAG
CTGGAGTAA

Translation (212 aa):
MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVALCNRAELTPE
LLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALACSALGVTITKTLKI
VCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSRMLNYMEQEVIGPDGIITVNDFTQNPRVQ
LE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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