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Report for CCDS53302.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
53302.1 |
Public |
Homo sapiens |
1 |
SCMH1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22955](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:53302.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22955](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 53302.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000372595.5 |
ENSP00000361676.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000372595.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000361676.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000372595](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000361676](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001172221.3 |
NP_001165692.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001172221.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001165692.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001172221](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001165692](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001165692.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001394303.1 |
NP_001381232.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001394303.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001381232.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001394303](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001381232](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001381232.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 53302.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1800 nt): ATGAAATTGGAAGCACAGGACCCCAGGAACACCACATCCACCTGTATTGCCACAGTAGTTGGACTGACAG GTGCCCGCCTTCGCCTGCGCCTTGATGGGAGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGC TGAAATCCAGCCTATTGGGAACTGTGAAAAGAATGGGGGTATGCTACAGCCACCTCTTGGATTTCGGCTG AATGCGTCTTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTT TCCACAAGGAGCCACCATCGCCTTCCCACAACTTCTTCAAAATGGGAATGAAGCTAGAAGCTGTGGACAG GAAGAACCCTCATTTCATTTGCCCAGCCACTATTGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACTTTT GATGGGTGGCGAGGGGCCTTTGACTACTGGTGCCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGT GTTCCTTGACTGGAGACAACCTGCAGCCTCCTGGCACCAAAGTTGTGATTCCAAAGAATCCCTATCCTGC CTCCGATGTGAATACTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGG CAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTG CCCCATCCAAGACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAA ACCTCGGACTTTGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACT GTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACA AGAATGGCAGCACAGGCCCCCACTTAGATAAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGC CCGTGCCTCTGTGGTGTTGCAGCAGGCTGTCCAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTC TTCAGCTTCCTCAAGCAAGGCCATGGTGGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCC TCAACCTCCCAGCAGTCAACAGCATCACCTACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCG TAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACTTGTCACTCACTGCCATAGAGTACAGC CACAGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAAC CACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCC CTTGCTTTCATCCTGTGGCCTCCCACCAAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTG TTAAAAGGATCAAATGAAAGAAGGGATATGGAATCATTTTGGAAACTAAATCGTTCCCCAGGGTCGGACC GATACCTGGAGAGCCGCGATGCCTCTCGACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGGATGT GATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGAGATC GATGGCAAGGCCCTGCTGCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTG CACTCAAGCTCTCCTACCACATTGACCGGCTGAAGCAGGGCAAGTTCTGA
Translation (599 aa): MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRL NASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTF DGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPG QRGRKPGKKRGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTST VPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTV FSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEYS HSHDRYLPGETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGV LKGSNERRDMESFWKLNRSPGSDRYLESRDASRLSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEI DGKALLLLRSDMMMKYMGLKLGPALKLSYHIDRLKQGKF
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