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Report for CCDS42360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42360.1 Public Homo sapiens 17 TAC4 24 110 108 CCDS HistoryNCBI Gene:255061Re-query CCDS DB by CCDS ID:42360.1Re-query CCDS DB by GeneID:255061See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326219.5 ENSP00000325286.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326219.5Link to Ensembl Protein Viewer:ENSP00000325286.5Re-query CCDS DB by Nucleotide ID:ENST00000326219Re-query CCDS DB by Protein ID:ENSP00000325286
Original member Current member NCBI NM_001077504.2 NP_001070972.1 Accepted alive Link to Nucleotide Sequence:NM_001077504.2Link to Protein Sequence:NP_001070972.1Re-query CCDS DB by Nucleotide ID:NM_001077504Re-query CCDS DB by Protein ID:NP_001070972Link to BLAST:NP_001070972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070972.1 87 Q86UU9-3 87 100% 0 0

Chromosomal Locations for CCDS 42360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49838642 49838673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49841552 49841584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49844064 49844157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49847913 49848017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGCTGCCTTGCCTCGCCCTGCTTCTCCTGATGGAGCTGTCCGTGTGCACTGTGGCAGGTGATGGTGGAG
AGGAACAGACACTCAGCACTGAAGCAGAGACCTGGGAAGGCGCTGGCCCCAGCATTCAGCTCCAGCTGCA
GGAGGTGAAGACGGGCAAGGCAAGCCAGTTCTTTGGGCTGATGGGGAAGCGAGTGGGAGGAAGACCTCTG
ATCCAGCCAAGGAGAAAAAAAGGCAGAGAGGATGAGGCCCAAGGTTCAGAGTAA

Translation (87 aa):
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL
IQPRRKKGREDEAQGSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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