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Report for CCDS13212.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13212.2 Public Homo sapiens 20 BPIFB3 24 110 108 CCDS HistoryNCBI Gene:359710Re-query CCDS DB by CCDS ID:13212.2Re-query CCDS DB by GeneID:359710See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13212.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375494.4 ENSP00000364643.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375494.4Link to Ensembl Protein Viewer:ENSP00000364643.4Re-query CCDS DB by Nucleotide ID:ENST00000375494Re-query CCDS DB by Protein ID:ENSP00000364643
Original member Current member NCBI NM_001376932.3 NP_001363861.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376932.3Link to Protein Sequence:NP_001363861.2Re-query CCDS DB by Nucleotide ID:NM_001376932Re-query CCDS DB by Protein ID:NP_001363861Link to BLAST:NP_001363861.2
Original member Current member NCBI NM_182658.5 NP_872599.2 Accepted alive Link to Nucleotide Sequence:NM_182658.5Link to Protein Sequence:NP_872599.2Re-query CCDS DB by Nucleotide ID:NM_182658Re-query CCDS DB by Protein ID:NP_872599Link to BLAST:NP_872599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363861.2 472 P59826 472 100% 0 0
NP_872599.2 472 P59826 472 100% 0 0

Chromosomal Locations for CCDS 13212.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33055436 33055547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33056542 33056698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33059378 33059482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33059891 33060031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33061768 33061831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33063615 33063675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33064457 33064548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33064666 33064845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33066824 33066877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33068803 33068973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33069888 33069955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33071253 33071295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33072104 33072167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33072717 33072793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33073576 33073605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGCTGGCCCTGTGGTCCCTGCTTCTGCTCTGGGGCCTGGCGACTCCATGCCAGGAGCTGCTAGAGACGG
TGGGCACGCTCGCTCGGATTGACAAGGATGAACTCGGCAAAGCCATCCAGAACTCACTGGTTGGGGAGCC
CATTCTGCAGAATGTGCTGGGATCGGTCACAGCTGTGAACCGGGGCCTCTTGGGCTCAGGAGGGCTGCTT
GGAGGAGGCGGCTTGCTGGGCCACGGAGGGGTTTTTGGCGTTGTCGAGGAGCTCTCTGGTCTGAAGATTG
AGGAGCTCACGCTGCCAAAGGTGTTGCTGAAGCTGCTGCCGGGATTTGGGGTGCAGCTGAGCCTGCACAC
CAAAGTGGGCATGCATTGCTCTGGCCCCCTTGGTGGCCTTCTGCAGCTGGCTGCGGAGGTGAACGTGACA
TCGCGGGTGGCGCTGGCCGTGAGCTCAAGGGGCACACCCATCCTTATCCTCAAGCGCTGCAGCACGCTCC
TGGGCCACATCAGCCTGTTCTCAGGGCTGCTGCCCACACCACTCTTTGGGGTCGTGGAACAGATGCTCTT
CAAGGTGCTTCCGGGACTGCTGTGCCCCGTGGTGGACAGTGTGCTGGGTGTGGTGAATGAGCTCCTGGGG
GCTGTGCTGGGCCTGGTGTCCCTTGGGGCTCTTGGGTCCGTGGAATTCTCTCTGGCCACATTGCCTCTCA
TCTCCAACCAGTACATAGAACTGGACATCAACCCTATCGTGAAGAGTGTAGCTGGTGATATCATTGACTT
CCCCAAGTCCCGTGCCCCAGCCAAGGTGCCCCCCAAGAAGGACCACACATCCCAGGTGATGGTGCCACTG
TACCTCTTCAACACCACGTTTGGACTCCTGCAGACCAACGGCGCCCTCGACATGGACATCACCCCTGAGC
TGGTTCCCAGCGATGTCCCACTGACAACTACAGACCTGGCAGCTTTGCTCCCTGAGGCCCTGGGGAAGCT
GCCCCTGCACCAGCAACTCCTACTGTTCCTGCGGGTGAGGGAAGCTCCCACGGTCACACTCCACAACAAG
AAGGCCTTGGTCTCCCTCCCAGCCAACATCCATGTGCTGTTCTATGTCCCTAAGGGGACCCCTGAATCCC
TCTTTGAGCTGAACTCCGTCATGACTGTGCGTGCCCAGCTGGCTCCCTCGGCTACCAAGCTGCACATCTC
CCTGTCCCTGGAACGGCTCAGTGTCAAGGTGGCCTCCTCCTTTACCCATGCCTTTGACGGATCGCGTTTA
GAAGAATGGCTCAGCCATGTGGTCGGGGCAGTGTATGCACCAAAGCTTAACGTGGCCCTGGATGTTGGAA
TTCCCCTGCCTAAGGTTCTTAATATCAATTTTTCCAATTCAGTTCTGGAGATCGTAGAGAATGCTGTTGT
GCTGACCGTGGCATCCTGA

Translation (472 aa):
MLALWSLLLLWGLATPCQELLETVGTLARIDKDELGKAIQNSLVGEPILQNVLGSVTAVNRGLLGSGGLL
GGGGLLGHGGVFGVVEELSGLKIEELTLPKVLLKLLPGFGVQLSLHTKVGMHCSGPLGGLLQLAAEVNVT
SRVALAVSSRGTPILILKRCSTLLGHISLFSGLLPTPLFGVVEQMLFKVLPGLLCPVVDSVLGVVNELLG
AVLGLVSLGALGSVEFSLATLPLISNQYIELDINPIVKSVAGDIIDFPKSRAPAKVPPKKDHTSQVMVPL
YLFNTTFGLLQTNGALDMDITPELVPSDVPLTTTDLAALLPEALGKLPLHQQLLLFLRVREAPTVTLHNK
KALVSLPANIHVLFYVPKGTPESLFELNSVMTVRAQLAPSATKLHISLSLERLSVKVASSFTHAFDGSRL
EEWLSHVVGAVYAPKLNVALDVGIPLPKVLNINFSNSVLEIVENAVVLTVAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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