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Report for CCDS48422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48422.1 Public Mus musculus 1 Selp 23 108 98 CCDS HistoryNCBI Gene:20344Re-query CCDS DB by CCDS ID:48422.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162746.1 ENSMUSP00000123924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162746.1Link to Ensembl Protein Viewer:ENSMUSP00000123924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162746Re-query CCDS DB by Protein ID:ENSMUSP00000123924
Original member Current member NCBI NM_011347.2 NP_035477.1 Accepted alive Link to Nucleotide Sequence:NM_011347.2Link to Protein Sequence:NP_035477.1Re-query CCDS DB by Nucleotide ID:NM_011347Re-query CCDS DB by Protein ID:NP_035477Link to BLAST:NP_035477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035477.1 768 Q01102 768 100% 0 0

Chromosomal Locations for CCDS 48422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164115387 164115389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164123702 164123792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164126227 164126613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164127197 164127304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164128163 164128348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164130079 164130264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164132138 164132323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164133867 164134052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164137104 164137289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164141352 164141537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164142674 164142883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164143894 164144079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164144895 164145014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164147319 164147349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164148476 164148530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGGCTGGCTGCCCAAAAGGTTCCTGGACGCCAAGACTCCGGAGTGTGATCCTGGGAGGGGCTCAACTCA
TCTGGTTCAGTGCTTTGATCTCTGAGCTTGTAAATCAGAAGGAAGTGGCTGCGTGGACCTATAACTACAG
CACAAAGGCATACTCATGGAATAACTCACGGGTGTTCTGTAGGAGGCACTTCACAGACTTAGTGGCCATC
CAGAATAAGAATGAAATCGCTCACCTCAATGACGTCATCCCATTCTTCAACTCTTACTACTGGATTGGTA
TCCGAAAGATCAACAATAAGTGGACCTGGGTGGGAACAAATAAGACACTCACGGAGGAGGCTGAGAACTG
GGCCGACAACGAGCCCAACAACAAGAAGAACAATCAGGACTGTGTGGAGATCTACATCAAGAGTAACTCG
GCCCCTGGCAAGTGGAATGATGAACCCTGTTTTAAACGAAAGCGGGCCCTGTGCTACACAGCCTCCTGCC
AGGACATGTCCTGCAGCAACCAAGGGGAGTGCATCGAGACCATTGGGAGCTATACCTGCTCCTGCTACCC
AGGCTTCTATGGGCCAGAGTGTGAATACGTCAAGGAGTGTGGAAAAGTCAACATCCCTCAACATGTTCTC
ATGAACTGCAGCCATCCCCTGGGGGAGTTCTCCTTCAACTCACAGTGCACCTTCAGCTGTGCTGAGGGCT
ACGAGCTGGACGGACCCGGCGAGCTGCAATGTTTGGCTTCTGGGATCTGGACAAATAACCCCCCGAAGTG
TGACGCTGTGCAATGTCAGAGCCTGGAAGCCCCTCCCCATGGAACCATGGCCTGTATGCACCCAATTGCT
GCCTTTGCCTACGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATAGAGCGAGGGGCTCCAACACAC
TCCACTGCACTGGCTCTGGTCAGTGGAGTGAACCACTGCCAACCTGTGAAGCTATTGCGTGTGAACCTCC
GGAGATCCCCATCCATGGGAGCATGGACTGCGTCCCATCTACAGGAACCTTTGGGTACAACAGCAGCTGC
ACTTTTCTCTGTGCAGAGGGGTTCGTGCTGAAGGGAAATGATGCCATTCAGTGTGCTGACTCCGGGCAGT
GGACAGCCCCAGCCCCATTCTGTGAAGCGTTGCAATGTCCAGAGTTTCCGGTTCCCAGTAAAGCCCAGGT
GAACTGCTCGGATCCCTTCGGTACCTTGACGTACCAGTCAGTCTGCAGCTTTTCCTGTGATGAAGGCTCG
CTCTTGGTGGGAGCAAGTGTGATAAGATGCCTGGCTACTGGACACTGGAATGGGGCTCCTCCCGAATGTC
AAGCTGTGTCCTGTGCCCCTATGCTCAGTCCTGAGAATGGATCCATGACCTGCGTTCAGCCTCTTGGGAA
TTCCACCTACAAATCCACATGCCAGTTCATGTGCGATGAAGGATTTTATCTATCTGGACCGGAAAGACTG
GATTGTTCTCCATCTGGACACTGGACAGGCACCCCTCCCACGTGTGAAGCCATCAAGTGTCCAGGAATCT
TCGCCCCAGAGCAAGGCAACCTGGATTGTTCTCATGTCCACGGAGAGTTTGGTGTTGGCTCTATCTGTCA
CTTCTCCTGCAATGAGGACTTTGAGCTACTGGGATCTGAAAATGTGGAATGCACAGTGTCTGGAAGATGG
TCAGCACCTCCGCCAACCTGCAAAGGCATAACATCACTTCCTGCCCCAGCAGTCCGATGCCCTGCCCTCA
CGACTCCTGGACAGGGCACAATGTCCTGCCAACACCACCTGGGAAGCTTTGGTCCGAACACCACTTGTTA
CTTTGGGTGCAAAACCGGATTTACACTCAGGGGAGCCAACTCGCTCCGCTGCAGGGCTTCAGGACAATGG
ACAGCAGTGACCCCCATGTGCAGAGCGGTCAAATGCTCCGAATTGCACATGGACACAGCAGTAGCAATGA
ACTGTTCCAATCCCTGGGGAAACTTTAGCTATGGATCAACCTGCACCTTCCAGTGCCCAGAGGGGCAGTC
ACTGAACGGCTCTGTGAGAGCAACCTGCCGAGAGGACGGTCACTGGTCAGATGCCATGCCAACCTGCCAA
GCAGGGACACTGACAATCCAGGAAGCTCTGACGTACTTGGGTGGTGCAGTGGCTTCTACAACAGGCCTGG
CAGTGGGCGGGACACTCCTGGCTCTGCTAAGAAAGCGTCTCAGAAAGAAAGATGATGGAAAATGCCCCTT
GAACCCTCACAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATATGACCCAACCCCTTAA

Translation (768 aa):
MAGCPKGSWTPRLRSVILGGAQLIWFSALISELVNQKEVAAWTYNYSTKAYSWNNSRVFCRRHFTDLVAI
QNKNEIAHLNDVIPFFNSYYWIGIRKINNKWTWVGTNKTLTEEAENWADNEPNNKKNNQDCVEIYIKSNS
APGKWNDEPCFKRKRALCYTASCQDMSCSNQGECIETIGSYTCSCYPGFYGPECEYVKECGKVNIPQHVL
MNCSHPLGEFSFNSQCTFSCAEGYELDGPGELQCLASGIWTNNPPKCDAVQCQSLEAPPHGTMACMHPIA
AFAYDSSCKFECQPGYRARGSNTLHCTGSGQWSEPLPTCEAIACEPPEIPIHGSMDCVPSTGTFGYNSSC
TFLCAEGFVLKGNDAIQCADSGQWTAPAPFCEALQCPEFPVPSKAQVNCSDPFGTLTYQSVCSFSCDEGS
LLVGASVIRCLATGHWNGAPPECQAVSCAPMLSPENGSMTCVQPLGNSTYKSTCQFMCDEGFYLSGPERL
DCSPSGHWTGTPPTCEAIKCPGIFAPEQGNLDCSHVHGEFGVGSICHFSCNEDFELLGSENVECTVSGRW
SAPPPTCKGITSLPAPAVRCPALTTPGQGTMSCQHHLGSFGPNTTCYFGCKTGFTLRGANSLRCRASGQW
TAVTPMCRAVKCSELHMDTAVAMNCSNPWGNFSYGSTCTFQCPEGQSLNGSVRATCREDGHWSDAMPTCQ
AGTLTIQEALTYLGGAVASTTGLAVGGTLLALLRKRLRKKDDGKCPLNPHSHLGTYGVFTNAAYDPTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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