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Report for CCDS20264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20264.1 Public Mus musculus 6 Sema4f 23 108 98 CCDS HistoryNCBI Gene:20355Re-query CCDS DB by CCDS ID:20264.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000641.14 ENSMUSP00000000641.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000641.14Link to Ensembl Protein Viewer:ENSMUSP00000000641.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000000641Re-query CCDS DB by Protein ID:ENSMUSP00000000641
Original member NCBI NM_011350.4 NP_035480.3 Updated not alive Link to Nucleotide Sequence:NM_011350.4Link to Protein Sequence:NP_035480.3Re-query CCDS DB by Nucleotide ID:NM_011350Re-query CCDS DB by Protein ID:NP_035480
Current member NCBI NM_011350.5 NP_035480.3 Accepted alive Link to Nucleotide Sequence:NM_011350.5Link to Protein Sequence:NP_035480.3Re-query CCDS DB by Nucleotide ID:NM_011350Re-query CCDS DB by Protein ID:NP_035480Link to BLAST:NP_035480.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035480.3 777 Q9Z123 777 100% 0 0

Chromosomal Locations for CCDS 20264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82913491 82914104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82914367 82914425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917322 82917482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917589 82917698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917823 82918045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82918184 82918331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82918532 82918710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82919317 82919468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82919563 82919682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82930898 82930991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82935587 82935685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82935895 82935954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82937061 82937212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82939461 82939623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGCTGGCCAGGGCCGAGCGGCCCCGCCCGGGCCCCCGGCCGCCTCCGGTCTCTCTCTTCCCGCCGCCGT
CGTCGCTGCTGCTGCTGCTGCTGGCGATGCTGAGCGCCCCGGTGTGCGGCCGCGTCCCCCGCTCGGTGCC
CAGAACCTCGCTGCCCATCTCCGAGGCTGACTCCTATCTCACCCGGTTTGCGGCCCCTCATACGTACAAT
TACTCTGCTCTCCTGGTGGATCCTGCTTCTCACACACTTTACGTCGGTGCACGGGACAGCATCTTCGCTT
TAACCCTGCCCTTCTCTGGGGAAAAGCCTCGAAGGATCGACTGGATGGTGCCCGAGACTCACAGACAGAA
CTGTAGGAAGAAAGGCAAGAAAGAGGACGAATGTCACAATTTTATCCAGATTCTCGCCATTGCCAATGCC
TCTCACCTCCTCACGTGTGGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGTTTCC
AGCAGGTTGAAAGACTTGAGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAACGGTCAGCAGCTGT
AATGGCTGGGGGCGTCCTCTACACCGCCACTGTGAAAAACTTCCTGGGGACAGAGCCGATTATCTCCCGA
GCTGTGGGTCGAGCTGAGGACTGGATTCGAACAGAGACCTTGTCATCCTGGCTTAATGCCCCAGCCTTTG
TCGCAGCTATGGTCCTGAGCCCGGCTGAGTGGGGGGATGAAGATGGAGACGATGAAATCTTCTTTTTCTT
CACGGAGACCTCCCGAGTCTTGGACTCATATGAGCGCATCAAGGTCCCACGAGTGGCCCGTGTGTGTGCG
GGGGACCTTGGGGGCCGGAAGACCCTTCAGCAGAGATGGACGACGTTTCTAAAGGCTGACCTGCTGTGTC
CAGGGCCCGAGCATGGAAGGGCCTCGGGGGTTCTGCAGGATATGACAGAGCTTCGACCTCAGCCTGGCGC
GGGGACCCCCCTCTTTTATGGCATCTTTTCCTCCCAGTGGGAAGGAGCCGCCATTTCTGCTGTGTGTGCC
TTCCGACCCCAAGACATCCGGGCAGTGCTGAATGGTCCCTTTAGAGAGCTAAAACATGACTGCAACAGGG
GACTACCTGTCATGGACAACGAGGTGCCCCAGCCCAGACCTGGAGAGTGCATCACCAACAACATGAAGTT
CCAGCAGTTTGGATCCTCACTCTCCCTGCCAGACCGTGTGCTCACCTTTATCAGAGACCACCCGCTCATG
GACAGGCCCGTGTTTCCAGCTGATGGCCGCCCCCTGCTGGTCACTACGGATACAGCCTATCTCAGAGTTG
TGGCTCACCGGGTGACCAGCCTCTCAGGGAAAGAATATGATGTGCTCTACCTGGGGACAGAGGATGGGCA
CCTCCATCGGGCTGTGCGCATCGGAGCTCAGCTCAGTGTCCTGGAGGATCTGGCCTTGTTCCCGGAAACA
CAGCCGGTTGAAAGCATGAAATTGTACCATGATTGGCTTCTGGTGGGCTCCCATACTGAGGTGACACAAG
TGAACACCAGCAACTGTGGCCGTCTCCAGAGCTGCTCAGAATGTATCCTGGCCCAGGATCCCGTGTGTGC
CTGGAGCTTCCGGCTCGATGCTTGTGTGGCCCATGCAGGCGAGCACCGTGGGATGGTTCAAGACATAGAG
TCAGCAGATGTCTCTTCTTTGTGTCCAAAAGAACCTGGAGAACATCCGGTAGTGTTTGAAGTTCCAGTGG
CTACGGTGGGCCACGTGGTCCTGCCGTGCTCCCCCAGTTCTGCCTGGGCATCCTGTGTGTGGCACCAGCC
CAGTGGAGTGACTTCGCTCACCCCACGAAGGGATGGGCTAGAGGTGGTGGTGACCCCAGGGGCCATGGGG
GCTTATGCTTGCGAGTGTCAGGAGGGTGGAGCCGCCCGTGTGGTGGCTGCTTATAGCTTGGTGTGGGGCA
GCCAGAGGGGGCCCGCAAACCGGGCCCACACCGTTGTGGGGGCTGGGCTGGTTGGCTTTTTCCTGGGTGT
TCTAGCAGCATCTCTCACTCTCCTCCTGATTGGTCGCCGTCAGCAGCGGCGGCGACAGAGGGAGCTTCTA
GCTAGAGACAAGGTGGGCTTAGATCTGGGGGCTCCACCTTCTGGGACCACAAGCTATAGCCAAGACCCTC
CCTCTCCTTCACCTGAAGATGAACGGCTGCCCCTGGCCCTGGGTAAGCGGGGCAGTGGTTTTGGTGGCTT
CCCTCCACCCTTCCTGCTGGATTCTTGCCCGAGCCCAGCCCACATCCGGCTCACTGGGGCTCCTCTGGCC
ACGTGCGATGAGACGTCTATCTAA

Translation (777 aa):
MLARAERPRPGPRPPPVSLFPPPSSLLLLLLAMLSAPVCGRVPRSVPRTSLPISEADSYLTRFAAPHTYN
YSALLVDPASHTLYVGARDSIFALTLPFSGEKPRRIDWMVPETHRQNCRKKGKKEDECHNFIQILAIANA
SHLLTCGTFAFDPKCGVIDVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLGTEPIISR
AVGRAEDWIRTETLSSWLNAPAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVARVCA
GDLGGRKTLQQRWTTFLKADLLCPGPEHGRASGVLQDMTELRPQPGAGTPLFYGIFSSQWEGAAISAVCA
FRPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGECITNNMKFQQFGSSLSLPDRVLTFIRDHPLM
DRPVFPADGRPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLSVLEDLALFPET
QPVESMKLYHDWLLVGSHTEVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRGMVQDIE
SADVSSLCPKEPGEHPVVFEVPVATVGHVVLPCSPSSAWASCVWHQPSGVTSLTPRRDGLEVVVTPGAMG
AYACECQEGGAARVVAAYSLVWGSQRGPANRAHTVVGAGLVGFFLGVLAASLTLLLIGRRQQRRRQRELL
ARDKVGLDLGAPPSGTTSYSQDPPSPSPEDERLPLALGKRGSGFGGFPPPFLLDSCPSPAHIRLTGAPLA
TCDETSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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