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Report for CCDS59507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59507.1 Public Homo sapiens 7 SPDYE2B 24 110 108 CCDS HistoryNCBI Gene:100310812Re-query CCDS DB by CCDS ID:59507.1Re-query CCDS DB by GeneID:100310812See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 59507.1
This CCDS representation lacks full-length human transcript support. Its exon combination is therefore inferred, but it is supported by a full-length orthologous mouse transcript, AK302217.1, and partial human transcripts.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507450.6 ENSP00000424058.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000507450.6Link to Ensembl Protein Viewer:ENSP00000424058.1Re-query CCDS DB by Nucleotide ID:ENST00000507450Re-query CCDS DB by Protein ID:ENSP00000424058
Original member Current member EBI ENST00000436228.6 ENSP00000440393.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436228.6Link to Ensembl Protein Viewer:ENSP00000440393.1Re-query CCDS DB by Nucleotide ID:ENST00000436228Re-query CCDS DB by Protein ID:ENSP00000440393
Original member Current member NCBI NM_001166339.2 NP_001159811.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166339.2Link to Protein Sequence:NP_001159811.1Re-query CCDS DB by Nucleotide ID:NM_001166339Re-query CCDS DB by Protein ID:NP_001159811Link to BLAST:NP_001159811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159811.1 402 A6NHP3-1 402 100% 0 0

Chromosomal Locations for CCDS 59507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102652349 102652508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102653451 102653669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102654984 102655214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102656248 102656306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102657551 102657636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102659690 102660083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102660206 102660265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGACAGAACGGAGACTAGGTTCCGTAAGAGGGGACAGATTACGGGAAAGATCACGACCAGCCGTCAAC
CGCACCCCCAGAATGAGCAGAGTCCCCAGCGGAGCACCTCGGGGTACCCCCTCCAGGAGGTGGTGGATGA
TGAAATGTTGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGG
AAGAGGGAGTGGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCT
GGGTAGTGGAGATGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCATCCATCCTCCCTGA
GCACCACAAGGACTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGC
TGGAAAAGGAAGATGGAGTGGTGGGACGAATCTGAGGAGTCGTTGGAGGAGGAGCCACGGAAGGTGCTCG
CCCCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAGCGACGGCG
AGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGA
TTCTTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCA
GCCGGGCCGGCTTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAATGA
CATGGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATAGGAAGAACCGCTCTCGC
ATACCCTTGCTCCGTAAGCCTTGGTTCCAGTTAGGCCATTCCATGAACCCGAGGGCCAGGAAGAACCGCT
CTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCACGAACCCGAGGGCCAGGAAGAA
CCGCTCTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCATGAACTCGAGGGCCAGG
AAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGACGGTTCCACTTCTTCTGTTCCATGAGCTGCAGGG
CTTGGGTTTCCCCAGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGA
TCGCGCTCACCTTTCCTAG

Translation (402 aa):
MDRTETRFRKRGQITGKITTSRQPHPQNEQSPQRSTSGYPLQEVVDDEMLGPSAPGVDPSPPCRSLGWKR
KREWSDESEEEPEKELAPEPEETWVVEMLCGLKMKLKQQRVSSILPEHHKDFNSQLAPGVDPSPPHRSFC
WKRKMEWWDESEESLEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLEDPVIKR
FLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYRKNRSR
IPLLRKPWFQLGHSMNPRARKNRSRIPLLRKRRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR
KNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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