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Report for CCDS55546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55546.1 Public Homo sapiens X SMIM9 24 110 108 CCDS HistoryNCBI Gene:100132963Re-query CCDS DB by CCDS ID:55546.1Re-query CCDS DB by GeneID:100132963See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369529.2 ENSP00000358542.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369529.2Link to Ensembl Protein Viewer:ENSP00000358542.1Re-query CCDS DB by Nucleotide ID:ENST00000369529Re-query CCDS DB by Protein ID:ENSP00000358542
Original member Current member NCBI NM_001162936.4 NP_001156408.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162936.4Link to Protein Sequence:NP_001156408.1Re-query CCDS DB by Nucleotide ID:NM_001162936Re-query CCDS DB by Protein ID:NP_001156408Link to BLAST:NP_001156408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156408.1 99 A6NGZ8 99 100% 0 0

Chromosomal Locations for CCDS 55546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 154823755 154823782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154829535 154829664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154830715 154830856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGAACCCCAGAAGCTGCTGATAATTGGATTTCTGCTATGCTCTCTAACTTGCCTCTTGTTGGAGACAG
TAGCTTCCTCTCCTTTGCCTTTGTCTGCCTTGGGAATACAAGAAAAAACAGGATCGAAACCACGCTCAGG
GGGTAATCACAGGTCCTGGCTGAACAACTTCAGGGATTACTTATGGCAACTTATCAAGAGTGCCTTACCT
CCAGCAGCCATTGTTGCTTTTCTTCTCACCTCAGCACTAATGGGGATCCTCTGCTGCTTCACCATTCTTG
TAGTTGATCCAGTCCACTGA

Translation (99 aa):
MEPQKLLIIGFLLCSLTCLLLETVASSPLPLSALGIQEKTGSKPRSGGNHRSWLNNFRDYLWQLIKSALP
PAAIVAFLLTSALMGILCCFTILVVDPVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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