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Report for CCDS19146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19146.1 Public Mus musculus 5 Shh 23 108 98 CCDS HistoryNCBI Gene:20423Re-query CCDS DB by CCDS ID:19146.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002708.4 ENSMUSP00000002708.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002708.4Link to Ensembl Protein Viewer:ENSMUSP00000002708.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002708Re-query CCDS DB by Protein ID:ENSMUSP00000002708
Original member NCBI NM_009170.3 NP_033196.1 Updated not alive Link to Nucleotide Sequence:NM_009170.3Link to Protein Sequence:NP_033196.1Re-query CCDS DB by Nucleotide ID:NM_009170Re-query CCDS DB by Protein ID:NP_033196
Current member NCBI NM_009170.4 NP_033196.1 Accepted alive Link to Nucleotide Sequence:NM_009170.4Link to Protein Sequence:NP_033196.1Re-query CCDS DB by Nucleotide ID:NM_009170Re-query CCDS DB by Protein ID:NP_033196Link to BLAST:NP_033196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033196.1 437 Q62226 437 100% 0 0

Chromosomal Locations for CCDS 19146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 28457855 28458603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 28461322 28461583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 28466461 28466763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCTGCTGCTGCTGGCCAGATGTTTTCTGGTGATCCTTGCTTCCTCGCTGCTGGTGTGCCCCGGGCTGG
CCTGTGGGCCCGGCAGGGGGTTTGGAAAGAGGCGGCACCCCAAAAAGCTGACCCCTTTAGCCTACAAGCA
GTTTATTCCCAACGTAGCCGAGAAGACCCTAGGGGCCAGCGGCAGATATGAAGGGAAGATCACAAGAAAC
TCCGAACGATTTAAGGAACTCACCCCCAATTACAACCCCGACATCATATTTAAGGATGAGGAAAACACGG
GAGCAGACCGGCTGATGACTCAGAGGTGCAAAGACAAGTTAAATGCCTTGGCCATCTCTGTGATGAACCA
GTGGCCTGGAGTGAAGCTGCGAGTGACCGAGGGCTGGGATGAGGACGGCCATCATTCAGAGGAGTCTCTA
CACTATGAGGGTCGAGCAGTGGACATCACCACGTCCGACCGGGACCGCAGCAAGTACGGCATGCTGGCTC
GCCTGGCTGTGGAAGCAGGTTTCGACTGGGTCTACTATGAATCCAAAGCTCACATCCACTGTTCTGTGAA
AGCAGAGAACTCCGTGGCGGCCAAATCCGGCGGCTGTTTCCCGGGATCCGCCACCGTGCACCTGGAGCAG
GGCGGCACCAAGCTGGTGAAGGACTTACGTCCCGGAGACCGCGTGCTGGCGGCTGACGACCAGGGCCGGC
TGCTGTACAGCGACTTCCTCACCTTCCTGGACCGCGACGAAGGCGCCAAGAAGGTCTTCTACGTGATCGA
GACGCTGGAGCCGCGCGAGCGCCTGCTGCTCACCGCCGCGCACCTGCTCTTCGTGGCGCCGCACAACGAC
TCGGGGCCCACGCCCGGGCCAAGCGCGCTCTTTGCCAGCCGCGTGCGCCCCGGGCAGCGCGTGTACGTGG
TGGCTGAACGCGGCGGGGACCGCCGGCTGCTGCCCGCCGCGGTGCACAGCGTGACGCTGCGAGAGGAGGA
GGCGGGCGCGTACGCGCCGCTCACGGCGCACGGCACCATTCTCATCAACCGGGTGCTCGCCTCGTGCTAC
GCTGTCATCGAGGAGCACAGCTGGGCACACCGGGCCTTCGCGCCTTTCCGCCTGGCGCACGCGCTGCTGG
CCGCGCTGGCACCCGCCCGCACGGACGGCGGGGGCGGGGGCAGCATCCCTGCAGCGCAATCTGCAACGGA
AGCGAGGGGCGCGGAGCCGACTGCGGGCATCCACTGGTACTCGCAGCTGCTCTACCACATTGGCACCTGG
CTGTTGGACAGCGAGACCATGCATCCCTTGGGAATGGCGGTCAAGTCCAGCTGA

Translation (437 aa):
MLLLLARCFLVILASSLLVCPGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRN
SERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESL
HYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEQ
GGTKLVKDLRPGDRVLAADDQGRLLYSDFLTFLDRDEGAKKVFYVIETLEPRERLLLTAAHLLFVAPHND
SGPTPGPSALFASRVRPGQRVYVVAERGGDRRLLPAAVHSVTLREEEAGAYAPLTAHGTILINRVLASCY
AVIEEHSWAHRAFAPFRLAHALLAALAPARTDGGGGGSIPAAQSATEARGAEPTAGIHWYSQLLYHIGTW
LLDSETMHPLGMAVKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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