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Report for CCDS13113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13113.1 Public Homo sapiens 20 BTBD3 24 110 108 CCDS HistoryNCBI Gene:22903Re-query CCDS DB by CCDS ID:13113.1Re-query CCDS DB by GeneID:22903See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378226.7 ENSP00000367471.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378226.7Link to Ensembl Protein Viewer:ENSP00000367471.2Re-query CCDS DB by Nucleotide ID:ENST00000378226Re-query CCDS DB by Protein ID:ENSP00000367471
Original member Current member EBI ENST00000405977.5 ENSP00000384545.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405977.5Link to Ensembl Protein Viewer:ENSP00000384545.1Re-query CCDS DB by Nucleotide ID:ENST00000405977Re-query CCDS DB by Protein ID:ENSP00000384545
Original member Current member NCBI NM_001395005.1 NP_001381934.1 Accepted alive Link to Nucleotide Sequence:NM_001395005.1Link to Protein Sequence:NP_001381934.1Re-query CCDS DB by Nucleotide ID:NM_001395005Re-query CCDS DB by Protein ID:NP_001381934Link to BLAST:NP_001381934.1
Original member Current member NCBI NM_001395006.1 NP_001381935.1 Accepted alive Link to Nucleotide Sequence:NM_001395006.1Link to Protein Sequence:NP_001381935.1Re-query CCDS DB by Nucleotide ID:NM_001395006Re-query CCDS DB by Protein ID:NP_001381935Link to BLAST:NP_001381935.1
Original member Current member NCBI NM_014962.4 NP_055777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014962.4Link to Protein Sequence:NP_055777.1Re-query CCDS DB by Nucleotide ID:NM_014962Re-query CCDS DB by Protein ID:NP_055777Link to BLAST:NP_055777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381934.1 522 Q9Y2F9-1 522 100% 0 0
NP_001381935.1 522 Q9Y2F9-1 522 100% 0 0
NP_055777.1 522 Q9Y2F9-1 522 100% 0 0

Chromosomal Locations for CCDS 13113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 11918276 11918601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 11919086 11919176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 11919718 11919836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 11922634 11923666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGTAGATGACAAGGAAAAGAACATGAAATGTCTCACCTTCTTCTTGATGCTTCCAGAGACGGTAAAGA
ACAGGTCCAAGAAAAGCTCAAAGAAAGCAAATACCAGCAGCAGCAGTAGCAACAGCAGCAAGTTGCCACC
AGTTTGTTATGAAATAATTACCTTGAAGACTAAAAAGAAGAAGATGGCTGCTGATATATTCCCCCGTAAA
AAGCCAGCCAACTCCAGCAGCACCAGCGTCCAGCAGTACCACCAGCAGAATCTCAGTAACAACAACCTTA
TCCCGGCCCCAAACTGGCAGGGTCTTTATCCCACCATTAGAGAGAGAAATGCGATGATGTTCAATAATGA
TTTGATGGCAGATGTACATTTTGTGGTTGGGCCACCAGGTGGGACTCAACGGTTGCCAGGACACAAATAT
GTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTTTTACGGAGAACTTGCAGAGGACAAAGATGAAA
TCCGTATACCAGATGTCGAACCTGCTGCTTTTCTCGCTATGCTGAAATATATCTATTGTGATGAAATTGA
CTTGGCTGCTGACACAGTGCTGGCCACACTTTATGCTGCCAAAAAGTACATTGTCCCTCACCTTGCCAGA
GCCTGTGTTAATTTCCTGGAGACCAGCCTGAGTGCCAAGAATGCCTGTGTGCTCCTCTCCCAGAGCTGCC
TGTTCGAGGAGCCAGACCTGACCCAGCGTTGCTGGGAGGTGATTGATGCCCAGGCTGAGTTAGCTCTCAA
GTCTGAGGGATTCTGCGATATTGACTTCCAGACACTAGAAAGTATTCTCCGTAGGGAAACTCTGAATGCC
AAAGAAATTGTGGTTTTTGAGGCAGCTCTCAACTGGGCTGAAGTAGAATGCCAACGACAAGATCTGGCGT
TGAGCATTGAAAATAAACGCAAGGTTCTAGGAAAGGCACTTTACTTGATCCGCATACCCACAATGGCCCT
CGATGATTTTGCAAATGGTGCTGCACAGTCCGGGGTATTAACTCTCAATGAGACCAACGACATCTTCCTC
TGGTATACTGCAGCCAAAAAGCCTGAGCTTCAGTTTGTGAGTAAAGCCCGTAAGGGCCTTGTCCCCCAGC
GCTGTCACCGTTTCCAGTCGTGTGCCTATCGAAGCAACCAATGGCGCTATCGTGGTCGCTGTGACAGCAT
CCAGTTTGCAGTTGATAAAAGAGTGTTCATTGCTGGCTTTGGGCTGTATGGCTCCAGCTGTGGTTCTGCA
GAATACAGTGCCAAGATTGAACTTAAGCGGCAGGGCGTTGTCCTGGGGCAGAACTTGAGCAAGTACTTCT
CAGATGGGTCCAGCAATACCTTTCCCGTATGGTTTGAATACCCAGTGCAGATCGAGCCAGACACCTTCTA
CACAGCCAGTGTGATACTGGATGGCAATGAACTCAGCTACTTTGGACAAGAAGGCATGACAGAAGTTCAG
TGTGGCAAAGTGACTGTCCAGTTTCAGTGCTCCTCAGATAGCACCAATGGCACTGGGGTACAGGGAGGGC
AGATCCCTGAACTTATATTCTATGCTTGA

Translation (522 aa):
MVDDKEKNMKCLTFFLMLPETVKNRSKKSSKKANTSSSSSNSSKLPPVCYEIITLKTKKKKMAADIFPRK
KPANSSSTSVQQYHQQNLSNNNLIPAPNWQGLYPTIRERNAMMFNNDLMADVHFVVGPPGGTQRLPGHKY
VLAVGSSVFHAMFYGELAEDKDEIRIPDVEPAAFLAMLKYIYCDEIDLAADTVLATLYAAKKYIVPHLAR
ACVNFLETSLSAKNACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLESILRRETLNA
KEIVVFEAALNWAEVECQRQDLALSIENKRKVLGKALYLIRIPTMALDDFANGAAQSGVLTLNETNDIFL
WYTAAKKPELQFVSKARKGLVPQRCHRFQSCAYRSNQWRYRGRCDSIQFAVDKRVFIAGFGLYGSSCGSA
EYSAKIELKRQGVVLGQNLSKYFSDGSSNTFPVWFEYPVQIEPDTFYTASVILDGNELSYFGQEGMTEVQ
CGKVTVQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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