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Report for CCDS2586.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2586.3 Under review, update Homo sapiens 3 RPUSD3 24 110 108 CCDS HistoryNCBI Gene:285367Re-query CCDS DB by CCDS ID:2586.3Re-query CCDS DB by GeneID:285367See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 2586.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation and transcript data. The upstream AUG has a weak Kozak sequence while the downstream AUG has a strong Kozak sequence. Due to leaky scanning by ribosomes, it is possible that some ribosomes may initiate translation from the downstream AUG codon while others start from the upstream one.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2586.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383820.10 ENSP00000373331.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383820.10Link to Ensembl Protein Viewer:ENSP00000373331.6Re-query CCDS DB by Nucleotide ID:ENST00000383820Re-query CCDS DB by Protein ID:ENSP00000373331
Original member Current member NCBI NM_173659.5 NP_775930.3 MANE Select Pending alive Link to Nucleotide Sequence:NM_173659.5Link to Protein Sequence:NP_775930.3Re-query CCDS DB by Nucleotide ID:NM_173659Re-query CCDS DB by Protein ID:NP_775930Link to BLAST:NP_775930.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775930.3 343 Q6P087-5 343 100% 0 0

Chromosomal Locations for CCDS 2586.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9838016 9838207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9839032 9839171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840184 9840307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840532 9840616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840698 9840805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9841983 9842082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9842199 9842243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9843465 9843601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9843890 9843990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGACGGCCGCCGTGTTTTGGGCCGGTTCTGGAGTGGCTGGCGGCGGGGCCTGGGTGTCCGCCCAGTGC
CCGAGGACGCAGGCTTTGGCACCGAAGCCCGGCATCAGAGGCAACCCCGCGGCTCCTGCCAACGGTCGGG
GCCCCTCGGGGACCAGCCCTTCGCGGGGCTGCTGCCAAAAAACCTCAGTCGGGAGGAGCTGGTTGATGCG
CTGCGGGCAGCCGTGGTGGACCGGAAAGGACCTCTAGTGACGTTGAACAAGCCACAGGGTCTACCAGTGA
CAGGAAAACCAGGAGAGCTGACGTTGTTCTCAGTGCTGCCAGAGCTGAGCCAGTCCCTAGGGCTCAGGGA
GCAGGAGCTTCAGGTTGTCCGAGCATCTGGGAAAGAAAGCTCTGGGCTTGTACTCCTCTCCAGCTGTCCC
CAGACAGCTAGTCGCCTCCAGAAGTACTTCACCCATGCACGGAGAGCCCAAAGGCCCACAGCCACCTACT
GTGCTGTCACTGATGGGATCCCAGCTGCTTCTGAGGGGAAGATCCAGGCTGCCCTGAAACTGGAACACAT
TGATGGGGTCAATCTCACAGTTCCAGTGAAGGCCCCATCCCGAAAGGACATCCTGGAAGGTGTCAAGAAG
ACTCTCAGTCACTTTCGTGTGGTAGCCACAGGCTCTGGCTGTGCCCTGGTCCAGCTGCAGCCACTGACAG
TGTTCTCCAGTCAACTACAGGTGCACATGGTACTACAGCTCTGCCCTGTGCTTGGGGACCACATGTACTC
TGCCCGTGTGGGCACTGTCCTGGGCCAGCGATTTCTGCTGCCAGCTGAGAACAACAAGCCCCAAAGACAG
GTCCTGGATGAAGCCCTCCTCAGACGCCTCCACCTGACCCCCTCCCAGGCTGCCCAGCTGCCCTTGCACC
TCCACCTACATCGGCTCCTTCTCCCAGGCACCAGGGCCAGGGACACCCCTGTTGAGCTCCTGGCACCACT
GCCCCCTTATTTCTCCAGGACCCTACAGTGCCTGGGGCTCCGCTTACAATAG

Translation (343 aa):
MDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQPFAGLLPKNLSREELVDA
LRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCP
QTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKK
TLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQ
VLDEALLRRLHLTPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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