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Report for CCDS11894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11894.1 Public Homo sapiens 18 DSC1 24 110 108 CCDS HistoryNCBI Gene:1823Re-query CCDS DB by CCDS ID:11894.1Re-query CCDS DB by GeneID:1823See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 11894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257198.6 ENSP00000257198.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257198.6Link to Ensembl Protein Viewer:ENSP00000257198.6Re-query CCDS DB by Nucleotide ID:ENST00000257198Re-query CCDS DB by Protein ID:ENSP00000257198
Original member Current member NCBI NM_024421.2 NP_077739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024421.2Link to Protein Sequence:NP_077739.1Re-query CCDS DB by Nucleotide ID:NM_024421Re-query CCDS DB by Protein ID:NP_077739Link to BLAST:NP_077739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077739.1 894 Q08554-1 894 100% 0 0

Chromosomal Locations for CCDS 11894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31130514 31130711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31131594 31131842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31132568 31132689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31133891 31134130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31134572 31134784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31139748 31139890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31140042 31140301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31141999 31142184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31143657 31143791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31145611 31145777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31148498 31148642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31154774 31154929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31156043 31156162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31157371 31157573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31159445 31159529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31162532 31162594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGGCTCTGGCCTCTGCTGCCCCAGGGAGCATCTTCTGTAAGCAGCTCCTTTTCTCTCTCCTGGTTTTAA
CATTACTTTGCGATGCTTGTCAGAAAGTTTATCTTCGAGTTCCTTCTCATCTTCAGGCTGAAACACTTGT
AGGCAAAGTGAATCTGGAGGAGTGTCTCAAGTCGGCCAGCCTAATCCGGTCCAGTGACCCTGCCTTCAGA
ATTCTAGAAGATGGCTCAATTTACACAACACATGACCTCATTTTGTCTTCTGAAAGGAAAAGTTTTTCCA
TTTTCCTTTCAGATGGTCAGAGACGGGAACAACAAGAGATAAAAGTTGTACTGTCAGCAAGAGAAAACAA
GTCTCCTAAGAAGAGACATACCAAAGACACAGCCCTCAAGCGCAGCAAGAGACGATGGGCTCCTATTCCA
GCTTCATTGATGGAGAACTCGTTGGGTCCATTTCCACAACACGTTCAGCAGATCCAATCTGATGCTGCAC
AGAATTACACCATCTTTTATTCCATAAGTGGGCCAGGCGTGGACAAAGAACCCTTCAATTTGTTTTACAT
AGAGAAAGACACTGGGGATATCTTTTGTACAAGGAGCATTGACCGTGAGAAATATGAACAGTTTGCGTTA
TATGGCTATGCAACAACTGCAGATGGCTATGCACCAGAATATCCACTCCCTTTGATCATCAAAATTGAAG
ATGATAATGATAACGCCCCATATTTTGAACACAGAGTGACTATCTTTACTGTGCCTGAAAATTGCCGATC
CGGAACTTCAGTGGGAAAAGTGACCGCCACAGACCTTGACGAACCTGACACTCTCCATACTCGTCTGAAA
TATAAAATCTTACAACAAATCCCAGATCATCCAAAGCATTTCTCCATACACCCAGATACCGGTGTCATCA
CCACAACTACACCTTTTCTGGATAGAGAAAAATGTGATACTTACCAGTTAATAATGGAAGTGCGAGACAT
GGGTGGTCAGCCTTTCGGTTTATTTAATACAGGAACAATTACTATTTCACTTGAGGATGAAAATGACAAT
CCACCATCTTTCACAGAAACTTCTTATGTTACAGAAGTAGAAGAAAACAGAATTGACGTGGAGATTTTAC
GAATGAAGGTACAGGATCAGGATTTGCCAAACACTCCTCACTCAAAGGCTGTATACAAAATCCTACAAGG
AAATGAAAATGGAAACTTCATAATTAGCACAGATCCAAATACAAATGAAGGAGTGCTGTGTGTTGTCAAG
CCATTGAACTATGAAGTCAATCGCCAAGTTATTTTGCAAGTTGGTGTCATTAACGAGGCACAATTCTCTA
AAGCAGCGAGCTCACAAACTCCTACAATGTGCACTACAACTGTCACCGTTAAAATTATAGACAGTGATGA
GGGCCCTGAATGCCACCCTCCAGTGAAAGTTATTCAGAGTCAAGATGGCTTCCCAGCTGGCCAAGAACTC
CTTGGATACAAAGCACTGGACCCGGAAATATCCAGTGGTGAAGGCTTAAGGTATCAGAAGTTAGGGGATG
AAGATAACTGGTTTGAAATTAATCAACACACTGGCGACTTGAGAACTCTAAAAGTACTAGATAGAGAATC
CAAATTTGTAAAAAACAACCAATACAATATTTCAGTTGTTGCAGTGGATGCAGTTGGCCGATCTTGCACT
GGAACATTAGTAGTTCATTTGGATGATTACAACGATCACGCACCTCAAATTGACAAAGAAGTGACCATTT
GTCAGAATAATGAGGATTTTGCTGTTCTGAAACCTGTAGATCCAGATGGACCTGAAAATGGACCACCTTT
TCAATTCTTTCTGGATAATTCTGCCAGTAAAAACTGGAACATAGAAGAAAAGGATGGTAAAACTGCCATT
CTTCGTCAACGGCAAAATCTTGATTATAACTATTATTCTGTGCCTATTCAAATAAAAGACAGGCATGGTT
TAGTTGCAACACATATGTTAACAGTGAGAGTATGTGACTGTTCAACTCCATCTGAGTGTAGAATGAAGGA
TAAAAGTACAAGAGACGTTAGACCAAATGTAATACTTGGAAGATGGGCTATTCTTGCTATGGTGTTGGGT
TCTGTATTGTTATTATGTATTCTGTTTACATGTTTCTGTGTCACTGCTAAGAGAACAGTCAAGAAATGTT
TTCCAGAAGACATAGCCCAGCAAAATTTAATTGTATCAAATACTGAAGGACCTGGAGAAGAAGTAACGGA
AGCAAATATTAGACTCCCCATGCAGACATCCAACATTTGTGACACAAGCATGTCTGTTGGTACTGTTGGT
GGCCAGGGAATCAAAACACAGCAAAGTTTTGAGATGGTCAAAGGAGGCTACACTTTGGATTCCAACAAAG
GAGGTGGACATCAGACCTTGGAGTCCGTCAAGGGAGTGGGGCAGGGAGATACTGGCAGATATGCGTACAC
GGACTGGCAGAGTTTCACCCAACCTCGGCTTGGCGAAAAGGTGTATTTGTGTGGACAAGATGAGGAGCAT
AAACATTGTGAAGACTACGTTTGTTCGTATAACTATGAAGGCAAAGGTTCTCTGGCCGGCTCAGTAGGTT
GCTGCAGCGATCGGCAGGAAGAAGAGGGACTGGAGTTTCTAGATCACCTGGAACCCAAATTTAGGACATT
AGCAAAGACATGCATCAAGAAATAA

Translation (894 aa):
MALASAAPGSIFCKQLLFSLLVLTLLCDACQKVYLRVPSHLQAETLVGKVNLEECLKSASLIRSSDPAFR
ILEDGSIYTTHDLILSSERKSFSIFLSDGQRREQQEIKVVLSARENKSPKKRHTKDTALKRSKRRWAPIP
ASLMENSLGPFPQHVQQIQSDAAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFCTRSIDREKYEQFAL
YGYATTADGYAPEYPLPLIIKIEDDNDNAPYFEHRVTIFTVPENCRSGTSVGKVTATDLDEPDTLHTRLK
YKILQQIPDHPKHFSIHPDTGVITTTTPFLDREKCDTYQLIMEVRDMGGQPFGLFNTGTITISLEDENDN
PPSFTETSYVTEVEENRIDVEILRMKVQDQDLPNTPHSKAVYKILQGNENGNFIISTDPNTNEGVLCVVK
PLNYEVNRQVILQVGVINEAQFSKAASSQTPTMCTTTVTVKIIDSDEGPECHPPVKVIQSQDGFPAGQEL
LGYKALDPEISSGEGLRYQKLGDEDNWFEINQHTGDLRTLKVLDRESKFVKNNQYNISVVAVDAVGRSCT
GTLVVHLDDYNDHAPQIDKEVTICQNNEDFAVLKPVDPDGPENGPPFQFFLDNSASKNWNIEEKDGKTAI
LRQRQNLDYNYYSVPIQIKDRHGLVATHMLTVRVCDCSTPSECRMKDKSTRDVRPNVILGRWAILAMVLG
SVLLLCILFTCFCVTAKRTVKKCFPEDIAQQNLIVSNTEGPGEEVTEANIRLPMQTSNICDTSMSVGTVG
GQGIKTQQSFEMVKGGYTLDSNKGGGHQTLESVKGVGQGDTGRYAYTDWQSFTQPRLGEKVYLCGQDEEH
KHCEDYVCSYNYEGKGSLAGSVGCCSDRQEEEGLEFLDHLEPKFRTLAKTCIKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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