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Report for CCDS46988.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46988.2 Under review, update Homo sapiens 3 LMLN 24 110 108 CCDS HistoryNCBI Gene:89782Re-query CCDS DB by CCDS ID:46988.2Re-query CCDS DB by GeneID:89782See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 46988.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420910.7 ENSP00000410926.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420910.7Link to Ensembl Protein Viewer:ENSP00000410926.3Re-query CCDS DB by Nucleotide ID:ENST00000420910Re-query CCDS DB by Protein ID:ENSP00000410926
Original member Current member NCBI NM_001136049.3 NP_001129521.3 MANE Select Pending alive Link to Nucleotide Sequence:NM_001136049.3Link to Protein Sequence:NP_001129521.3Re-query CCDS DB by Nucleotide ID:NM_001136049Re-query CCDS DB by Protein ID:NP_001129521Link to BLAST:NP_001129521.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129521.3 684 Q96KR4-3 684 100% 0 0

Chromosomal Locations for CCDS 46988.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 197960246 197960440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197974377 197974474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197975042 197975072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197976029 197976111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197976598 197976715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197980326 197980504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197983943 197984048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197985796 197985890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197990559 197990676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197996175 197996282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197999266 197999342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198003015 198003125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198019253 198019385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198021446 198021605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198024658 198024788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198035833 198036043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198038567 198038667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGCGGCCGAATGGGGCGGAGGAGTGGGTTACTCGGGCTCAGGCCCGGGCCGGAGCCGGTGGCGCTGGA
GCGGGTCTGTGTGGGTCCGAAGCGTTTTACTCCTGTTGGGCGGGCTCCGGGCCAGCGCCACATCTACTCC
CGTCTCCTTGGGCAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGACACTGAGGTCATAAATAAAGTT
CATCTTAAGGCAAATCATGTGGTCAAGAGAGATGTTGATGAGCATTTAAGAATCAAGACTGTCTATGATA
AAAGTGTTGAAGAGTTGCTCCCTGAGAAAAAGAATCTTGTAAAGAACAAGCTTTTCCCACAAGCGATTTC
TTATTTAGAGAAGACTTTTCAGGTCCGTCGACCTGCGGGCACTATCTTACTTAGCAGACAATGTGCAACA
AACCAATACCTCCGGAAGGAAAACGATCCTCACAGGTACTGCACCGGGGAGTGTGCCGCACACACAAAGT
GCGGCCCCGTTATTGTTCCTGAGGAACATCTCCAGCAATGCCGGGTCTACCGTGGGGGTAAGTGGCCTCA
TGGAGCAGTGGGTGTGCCAGACCAAGAAGGCATCTCAGATGCAGACTTTGTTCTTTACGTTGGTGCTCTG
GCCACCGAGAGATGCAGCCATGAAAACATCATCTCTTATGCAGCCTATTGTCAGCAGGAAGCAAACATGG
ACAGGCCAATAGCAGGATATGCTAACCTGTGTCCAAATATGATCTCTACCCAGCCTCAGGAGTTTGTTGG
GATGCTGTCCACAGTGAAACATGAGGTTATTCATGCCCTGGGTTTCTCTGCTGGGCTGTTTGCATTCTAC
CATGATAAAGATGGAAATCCTCTCACTTCAAGATTTGCAGATGGCCTCCCACCTTTTAATTATAGTCTGG
GATTATATCAATGGAGTGATAAAGTAGTTCGAAAAGTGGAGAGATTATGGGATGTTCGAGATAATAAGAT
AGTTCGTCACACTGTGTATCTCCTGGTAACGCCTCGTGTTGTTGAGGAAGCACGAAAACATTTTGATTGT
CCAGTTCTAGAGGGAATGGAACTTGAAAATCAAGGTGGTGTGGGCACTGAGCTCAACCATTGGGAAAAAA
GGTTATTAGAGAATGAAGCGATGACTGGTTCTCACACTCAGAATCGAGTACTCTCTCGAATCACTCTGGC
ATTAATGGAGGACACTGGCTGGTATAAAGCAAATTACAGCATGGCTGAGAAGTTAGACTGGGGCCGAGGA
ATGGGCTGTGACTTTGTCAGGAAGAGCTGTAAATTCTGGATTGATCAGCAGAGACAAAAGAGACAGATGC
TGAGCCCTTACTGTGACACGCTCAGAAGTAACCCACTGCAGCTAACTTGCAGACAGGACCAGAGAGCAGT
TGCCGTGTGTAATTTGCAGAAGTTCCCTAAGCCTTTACCACAGGAATACCAGTACTTTGATGAACTCAGT
GGAATACCTGCAGAAGATTTGCCTTATTATGGTGGCTCCGTGGAAATTGCTGACTACTGCCCTTTCAGTC
AGGAATTCAGTTGGCATTTAAGTGGTGAATATCAGCGCAGCTCAGATTGTAGAATATTGGAAAATCAACC
AGAAATTTTTAAGAACTATGGCGCTGAAAAGTATGGACCTCATTCCGTTTGTCTAATTCAGAAATCAGCA
TTCGTTATGGAGAAGTGTGAGAGGAAGCTGAGTTACCCAGACTGGGGAAGCGGATGCTATCAGGTTTCTT
GTTCTCCTCAAGGTCTGAAAGTTTGGGTCCAAGATACTTCATATTTGTGTAGTCGGGCTGGGCAGGTCCT
CCCTGTCAGTATCCAGATGAATGGCTGGATTCACGATGGAAACCTGCTCTGCCCATCATGTTGGGACTTC
TGTGAGCTCTGTCCTCCAGAAACAGATCCTCCAGCCACTAACCTGACCCGAGCTCTGCCACTTGATCTTT
GTTCCTGTTCCTCGAGCCTGGTGGTCACCCTCTGGCTTCTGCTAGGCAATCTGTTTCCTCTGCTGGCTGG
ATTTCTTCTGTGTATATGGCACTAG

Translation (684 aa):
MAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGSSPPCRHHVPSDTEVINKV
HLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLFPQAISYLEKTFQVRRPAGTILLSRQCAT
NQYLRKENDPHRYCTGECAAHTKCGPVIVPEEHLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGAL
ATERCSHENIISYAAYCQQEANMDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFY
HDKDGNPLTSRFADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDC
PVLEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGWYKANYSMAEKLDWGRG
MGCDFVRKSCKFWIDQQRQKRQMLSPYCDTLRSNPLQLTCRQDQRAVAVCNLQKFPKPLPQEYQYFDELS
GIPAEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRSSDCRILENQPEIFKNYGAEKYGPHSVCLIQKSA
FVMEKCERKLSYPDWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWDF
CELCPPETDPPATNLTRALPLDLCSCSSSLVVTLWLLLGNLFPLLAGFLLCIWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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