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Report for CCDS90931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90931.1 Public Homo sapiens 1 CCDC30 24 110 108 CCDS HistoryNCBI Gene:728621Re-query CCDS DB by CCDS ID:90931.1Re-query CCDS DB by GeneID:728621See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90931.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000664805.1 ENSP00000499336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000664805.1Link to Ensembl Protein Viewer:ENSP00000499336.1Re-query CCDS DB by Nucleotide ID:ENST00000664805Re-query CCDS DB by Protein ID:ENSP00000499336
Original member Current member EBI ENST00000660083.1 ENSP00000499483.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000660083.1Link to Ensembl Protein Viewer:ENSP00000499483.1Re-query CCDS DB by Nucleotide ID:ENST00000660083Re-query CCDS DB by Protein ID:ENSP00000499483
Original member Current member EBI ENST00000668663.1 ENSP00000499699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000668663.1Link to Ensembl Protein Viewer:ENSP00000499699.1Re-query CCDS DB by Nucleotide ID:ENST00000668663Re-query CCDS DB by Protein ID:ENSP00000499699
Original member Current member EBI ENST00000667205.1 ENSP00000499722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000667205.1Link to Ensembl Protein Viewer:ENSP00000499722.1Re-query CCDS DB by Nucleotide ID:ENST00000667205Re-query CCDS DB by Protein ID:ENSP00000499722
Original member Current member NCBI NM_001395382.1 NP_001382311.1 Accepted alive Link to Nucleotide Sequence:NM_001395382.1Link to Protein Sequence:NP_001382311.1Re-query CCDS DB by Nucleotide ID:NM_001395382Re-query CCDS DB by Protein ID:NP_001382311Link to BLAST:NP_001382311.1
Original member Current member NCBI NM_001395383.1 NP_001382312.1 Accepted alive Link to Nucleotide Sequence:NM_001395383.1Link to Protein Sequence:NP_001382312.1Re-query CCDS DB by Nucleotide ID:NM_001395383Re-query CCDS DB by Protein ID:NP_001382312Link to BLAST:NP_001382312.1
Original member Current member NCBI NM_001395384.1 NP_001382313.1 Accepted alive Link to Nucleotide Sequence:NM_001395384.1Link to Protein Sequence:NP_001382313.1Re-query CCDS DB by Nucleotide ID:NM_001395384Re-query CCDS DB by Protein ID:NP_001382313Link to BLAST:NP_001382313.1
Original member Current member NCBI NM_001395385.1 NP_001382314.1 Accepted alive Link to Nucleotide Sequence:NM_001395385.1Link to Protein Sequence:NP_001382314.1Re-query CCDS DB by Nucleotide ID:NM_001395385Re-query CCDS DB by Protein ID:NP_001382314Link to BLAST:NP_001382314.1

Chromosomal Locations for CCDS 90931.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42480552 42480566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42482663 42482816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42490158 42490229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42497098 42497213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42498818 42498916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42566296 42566475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42577020 42577229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42581360 42581514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42589321 42589483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42610978 42611090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42637237 42637378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42642473 42642609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42644693 42644807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42646135 42646317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42653376 42653443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42653818 42654028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCTGGAATTACAGTATCATAATGAAGACCTGGAAAAAGACAAAACATCACAAAACTGCCTAGGAAGAG
GAATGGAACAAGTAGCAAAGAAGTTAGGGGTGGCTCATGAAGAGATTCAAAGGCTCACTGATGAACTACA
AGTGAAGGAGAAGGAACAATGTAAATTAGATTCTGCACTTAAGAAGGCTCAACTAGAAATTGACAAATTG
AAGGAAAATTTGGTAAAGCTGAAAGAAAATGATGCAGCTGACCTACAGAAAGCAAAGGAACAAAATCAGA
GACTGGATGAGGAAATTCTGGCTTTAAGAAATAGGGTTCGATCACTTGACTCAGAAAAAAAGGTGCTTGG
TGAAATGGTTGAAAGACTTAAAGGAGAGGTGTGTGAATCTCAAGAGAATAAGCAACTTGGAAACCACTCC
CCTGGAAAAACTGTGGGTGGTGAACAGAGAGAACAGCATCCATCATCTGGAGAAAAACTAAAATACAACC
AGCAAGGGGAAGTACAACAACTTCACCAGAATTTGCACCGGCTCCAGATTCTATGCAACTCAGCTGAAAA
TGAGCTTCGATATGAACGAGGGCAGAACTTGGACTTAAAGCAACATAATAGCTTACTTCAGGAAGAAAAC
ATTAAGATAAAGATTGAACTAAAGCATGCCCAACAGAAGTTATTAGACAGCACAAAGATGTGCTCTTCAC
TCACGGCAGAGTACAAGCACTGTCAGCAGAAAATCAAGGAACTGGAGTTGGAAGTACTTAAACACACTCA
GAGCATTAAATCACAGAACAACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGAG
GAAAAGATTTTGGACCTGCAGCGGAAATTAGAACATGCTCATAAAGTCTGTCTCACAGACACTTGTATTT
CAGAGAAGCAGCAGCTAGAGGAAAAGATAAAAGAAGCAACACAAAATGAAGCTAAAGTAAAGCAACAATA
TCAAGAAGAACAACAGAAGAGGAAACTTCTATATCAGAACGTAGATGAGTTACACAGGCAAGTGAGAACC
TTACAAGATAAAGAAAATCTACTGGAAATGACCTGTTCTCAGCAACAATCCAGAATTCAGCAACAAGAGG
CCCTACTTAAACAACTGGAAAATGAAAAAAGAAAATATGATGAGCATGTCAAAAGCAACCAGGAATTGTC
AGAGAAGCTATCTAAGCTACAGCAAGAGAAGGAAGCTCTACGTGAAGAATATTTGCGATTATTGAAGCTG
CTTAATGTCCATGTGAGAAACTATAATGAGAAACATCACCAACAAAAAGTCAAGCTTCAAAAAGTCAAGT
ATCGTTTAACTAATGAAGTAGAACTACGAGATAAGAGAATTAACCAATTTGAAGATGAAATTGGAATCCT
GCAACATAAAATAGAAAAGGAGAAGGCAATACAGGACCAGATCACTGCCCAAAATGATACCCTGCTTCTA
GAAAAAAGGAAACTTCAGGAGCAAGTCATAGAGCAAGAACAGTTGATCCACAGCAACAAATGGACGATAT
CTTCCATCCAGAGCAGGGTACTTTACATGGATAAAGAAAATAAGCAATTACAGGAAAATAGTCTTCGTCT
CACACAGCAGATTGGCTTCTTAGAGCGAATTATAAGGAGCATCCATATTCGCAGAGGAGAGAATCTTAAG
GAGTTTCCTGTTCCAAAATGGTGGCATAGAGGCAAGCTGGCTTCTCTCCCTCCAACAAAGAAACAGAAAG
AAATATACAGCACTGAGGTCTTCACCAGCAACAATGCAGAACTCCAGCATGAGGATGAGTCAGTTCCTGA
GGCCACAGAGAAGTGGAAACACTCTGAGCAGATGGAAACAACAATTAGTGACATCCTTGAATCCGAAGTA
GTGAATGAAATATTGCCTTTATCAAACTCCAGTTTTTCAGGAAAAGGTTTGGTAGAGTCATTTGCAAGTC
TTCAAGAGACTGAAGAGATCAAGTCAAAAGAAGCAATGGCAAGTTCAAAGTCCCCTGAAAAGTCTCCTGA
GAATCTTGTGTGTTCACAGAATTCTGAGGCTGGATACATAAATGTGGCTTCTCTGAAGGAGACACATGGT
ATACAAGAACAAGACCAAAAGTCAGAACTATAA

Translation (710 aa):
MLELQYHNEDLEKDKTSQNCLGRGMEQVAKKLGVAHEEIQRLTDELQVKEKEQCKLDSALKKAQLEIDKL
KENLVKLKENDAADLQKAKEQNQRLDEEILALRNRVRSLDSEKKVLGEMVERLKGEVCESQENKQLGNHS
PGKTVGGEQREQHPSSGEKLKYNQQGEVQQLHQNLHRLQILCNSAENELRYERGQNLDLKQHNSLLQEEN
IKIKIELKHAQQKLLDSTKMCSSLTAEYKHCQQKIKELELEVLKHTQSIKSQNNLQEKLVQEKSKVADAE
EKILDLQRKLEHAHKVCLTDTCISEKQQLEEKIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQVRT
LQDKENLLEMTCSQQQSRIQQQEALLKQLENEKRKYDEHVKSNQELSEKLSKLQQEKEALREEYLRLLKL
LNVHVRNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHKIEKEKAIQDQITAQNDTLLL
EKRKLQEQVIEQEQLIHSNKWTISSIQSRVLYMDKENKQLQENSLRLTQQIGFLERIIRSIHIRRGENLK
EFPVPKWWHRGKLASLPPTKKQKEIYSTEVFTSNNAELQHEDESVPEATEKWKHSEQMETTISDILESEV
VNEILPLSNSSFSGKGLVESFASLQETEEIKSKEAMASSKSPEKSPENLVCSQNSEAGYINVASLKETHG
IQEQDQKSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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