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Report for CCDS92877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92877.1 Public Homo sapiens 2 PRPF40A 24 110 108 CCDS HistoryNCBI Gene:55660Re-query CCDS DB by CCDS ID:92877.1Re-query CCDS DB by GeneID:55660See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000696382.1 ENSP00000512592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696382.1Link to Ensembl Protein Viewer:ENSP00000512592.1Re-query CCDS DB by Nucleotide ID:ENST00000696382Re-query CCDS DB by Protein ID:ENSP00000512592
Original member Current member NCBI NM_001395477.1 NP_001382406.1 Accepted alive Link to Nucleotide Sequence:NM_001395477.1Link to Protein Sequence:NP_001382406.1Re-query CCDS DB by Nucleotide ID:NM_001395477Re-query CCDS DB by Protein ID:NP_001382406Link to BLAST:NP_001382406.1
Original member Current member NCBI NM_001395478.1 NP_001382407.1 Accepted alive Link to Nucleotide Sequence:NM_001395478.1Link to Protein Sequence:NP_001382407.1Re-query CCDS DB by Nucleotide ID:NM_001395478Re-query CCDS DB by Protein ID:NP_001382407Link to BLAST:NP_001382407.1

Chromosomal Locations for CCDS 92877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152656306 152656398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152657889 152658020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152658948 152659009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152659093 152659189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152659270 152659356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152662603 152662698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663035 152663172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663655 152663771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663876 152663967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152664138 152664252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152669137 152669270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152670231 152670381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152671273 152671381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152672459 152672623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152672978 152673042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152673598 152673706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152676405 152676779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152677451 152677475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152679056 152679109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152679352 152679472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152681226 152681336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152690962 152690978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152693038 152693068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152694542 152694622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152715995 152716126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152717356 152717394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGAGGCCGGGGACGGGAGCTGAGCGTGGAGGCCTCATGATGGGGCACCCTGGCATGCATTATGCCCCAA
TGGGAATGCACCCTATGGGTCAGAGAGCGAATATGCCTCCTGTACCTCATGGAATGATGCCGCAGATGAT
GCCCCCTATGGGAGGGCCACCAATGGGACAAATGCCTGGAATGATGTCGTCAGTAATGCCTGGAATGATG
ATGTCTCATATGTCTCAGGCTTCCATGCAGCCTGCCTTACCGCCAGGAGTAAATAGTATGGATGTAGCAG
CAGGTACAGCATCTGGTGCAAAATCAATGTGGACTGAACATAAATCACCTGATGGAAGGACTTACTACTA
CAACACTGAAACCAAACAGTCTACCTGGGAGAAACCAGATGATCTTAAAACACCTGCTGAGCAACTCTTA
TCTAAATGCCCCTGGAAGGAATACAAATCAGATTCTGGAAAGCCTTACTATTATAATTCTCAAACAAAAG
AATCTCGCTGGGCCAAACCTAAAGAACTTGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAAG
TCTTATTACAAAATCAAACCTGCATGCAATGATCAAAGCTGAAGAAAGCAGTAAGCAAGAAGAGTGCACC
ACAACATCAACAGCCCCAGTCCCTACAACAGAAATTCCGACCACAATGAGCACCATGGCTGCTGCCGAAG
CAGCAGCTGCTGTTGTTGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCTGCAGCCAATGCTAATGCTTC
CACTTCTGCTTCTAATACTGTCAGTGGAACTGTTCCAGTTGTTCCTGAGCCTGAAGTTACTTCCATTGTT
GCTACTGTTGTAGATAATGAGAATACAGTAACTATTTCAACTGAGGAACAAGCACAACTTACTAGTACCC
CTGCTATTCAGGATCAAAGTGTGGAAGTATCCAGTAATACTGGAGAAGAAACATCTAAGCAAGAAACTGT
AGCTGATTTTACTCCCAAAAAAGAAGAGGAGGAGAGCCAACCAGCAAAGAAAACATACACTTGGAATACA
AAGGAAGAGGCAAAGCAAGCTTTTAAAGAATTATTGAAAGAAAAGCGGGTACCATCGAATGCTTCATGGG
AGCAGGCTATGAAAATGATTATTAATGATCCACGATACAGTGCTTTGGCAAAGTTAAGTGAAAAAAAGCA
AGCCTTTAATGCCTATAAAGTCCAGACAGAAAAAGAAGAAAAAGAAGAAGCAAGATCAAAGTACAAAGAG
GCTAAGGAATCCTTTCAGCGTTTTCTTGAAAATCATGAGAAAATGACTTCTACAACCAGATACAAAAAAG
CAGAGCAAATGTTTGGAGAGATGGAAGTTTGGAATGCAATATCAGAACGTGATCGTCTTGAAATCTATGA
AGATGTTTTGTTCTTTCTTTCAAAAAAAGAAAAGGAACAAGCAAAGCAGTTGCGAAAGAGAAATTGGGAA
GCCTTAAAAAACATACTTGACAACATGGCTAATGTAACATACTCTACCACTTGGTCTGAAGCCCAGCAGT
ATCTGATGGATAATCCAACTTTTGCAGAAGATGAGGAGTTACAAAATATGGACAAAGAAGATGCATTAAT
TTGCTTTGAAGAACACATTCGGGCTTTAGAAAAGGAGGAAGAAGAAGAAAAACAGAAGAGTTTGCTGAGA
GAAAGGAGACGACAGCGAAAAAATAGGGAATCTTTCCAGATATTTTTAGATGAATTACATGAACATGGAC
AACTGCATTCTATGTCATCTTGGATGGAATTGTATCCAACTATTAGTTCTGATATTAGATTCACTAATAT
GCTTGGTCAGCCTGGATCAACTGCACTTGATCTTTTCAAGTTTTATGTTGAGGATCTTAAAGCACGTTAT
CATGACGAGAAGAAGATAATAAAAGACATTCTAAAGGATAAAGGATTTGTAGTTGAAGTAAACACTACTT
TTGAAGATTTTGTGGCGATAATCAGTTCAACTAAAAGATCAACTACATTAGATGCTGGAAATATCAAATT
GGCTTTCAATAGTTTACTAGAAAAGGCAGAAGCCCGTGAACGTGAAAGAGAAAAAGAAGAGGCTCGGAAG
ATGAAACGAAAAGAATCTGCATTTAAGAGTATGTTAAAACAAGCTGCTCCTCCGATAGAATTGGATGCTG
TCTGGGAAGATATCCGTGAGAGATTTGTAAAAGAGCCAGCATTTGAGGACATAACTCTAGAATCTGAAAG
AAAACGAATATTTAAAGATTTTATGCATGTGCTTGAGCATGAATGTCAGCATCATCATTCAAAGAACAAG
AAACATTCTAAGAAATCTAAAAAACATCATAGGAAACGTTCCCGCTCTCGATCGGGGTCAGATTCAGATG
ATGATGATAGCCATTCAAAGAAAAAAAGACAGCGATCAGAGTCTCGTTCTGCTTCAGAACATTCTTCTAG
TGCAGAGTCTGAGAGAAGTTATAAAAAGTCAAAAAAGCATAAGAAGAAAAGTAAGAAGAGGAGACATAAA
TCTGACTCTCCAGAATCCGATGCTGAGCGAGAGAAGGATAAAAAAGAAAAAGATCGGGAAAGTGAAAAAG
ACAGAACTAGACAAAGATCAGAATCAAAACACAAATCGCCTAAGAAAAAGACTGGAAAGGATTCTGGTAA
TTGGGATACTTCTGGCAGCGAACTGAGTGAAGGGGAATTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAA
CTGGATGATGATCAATAA

Translation (915 aa):
MRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMM
MSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLL
SKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECT
TTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIV
ATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNT
KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKE
AKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWE
ALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLR
ERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARY
HDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNK
KHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHK
SDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQ
LDDDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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