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Report for CCDS86397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86397.1 Public Homo sapiens 14 LRRC9 24 110 108 CCDS HistoryNCBI Gene:341883Re-query CCDS DB by CCDS ID:86397.1Re-query CCDS DB by GeneID:341883See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 86397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647410.1 ENSP00000493790.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647410.1Link to Ensembl Protein Viewer:ENSP00000493790.1Re-query CCDS DB by Nucleotide ID:ENST00000647410Re-query CCDS DB by Protein ID:ENSP00000493790
Original member Current member NCBI NM_001355272.3 NP_001342201.1 Accepted alive Link to Nucleotide Sequence:NM_001355272.3Link to Protein Sequence:NP_001342201.1Re-query CCDS DB by Nucleotide ID:NM_001355272Re-query CCDS DB by Protein ID:NP_001342201Link to BLAST:NP_001342201.1
Original member Current member NCBI NM_001395648.1 NP_001382577.1 Accepted alive Link to Nucleotide Sequence:NM_001395648.1Link to Protein Sequence:NP_001382577.1Re-query CCDS DB by Nucleotide ID:NM_001395648Re-query CCDS DB by Protein ID:NP_001382577Link to BLAST:NP_001382577.1

Chromosomal Locations for CCDS 86397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59927944 59927991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59928268 59928486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59930918 59931058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59931619 59931682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59931969 59932039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59938390 59938572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59944589 59944744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59959818 59960014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59960914 59961045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59966589 59966765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59967096 59967213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59974576 59974708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59977225 59977347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59978017 59978132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59981848 59982060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59985105 59985224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59997656 59997847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59999101 59999226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60001966 60002100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60003621 60003798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60006397 60006617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60008092 60008214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60016660 60016790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60018371 60018479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60019121 60019260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60022734 60022870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60027884 60028101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60031995 60032063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60053065 60053205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60057878 60058022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60062011 60062179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60063323 60063362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4485 nt):
ATGATTGAAAGTGAAAACCTAAACCAAGAAGAAATAATTAAAGAACTGTGTTTGTGCAATGGCTTATCTT
ATGAGATGGTTGGACAAGAAGGATCAGATACATCAAAGTTGGAGATGTTTTTCTTAGGGTATCCTCGTAT
AGTTGGATTATCATTATTTCCTAATTTAACGAGTCTTACCATTGTTGCTCAAGATATAAAAGAAATTTCA
GGGTTAGAGCCTTGTTTACAACTTAAAGAACTTTGGATTGCTGAGTGCTGCATAGAGAAAATTGAAGGTC
TTCAAGAATGTAGAAATTTGGAAAAACTATATTTATATTTTAATAAAATTTCCAAAATAGAAAATTTAGA
GAAATTAATCAAATTGAAGGTTCTTTGGCTGAACCACAATACAATTAAAAATATTGAGGGTTTGCAAACT
TTGAAGAATTTAAAAGATCTCAACCTTGCTGGAAATCTAATAAATAGCATTGGTCGATGTCTTGACTCCA
ATGAACAACTGGAAAGATTAAACCTTTCTGGTAACCAAATATGTTCTTTCAAGGAACTCACGAACTTAAC
CAGGCTGCCTTGCTTAAAGGATTTATGTCTGAATGACCCTCAATATACAACCAATCCAGTTTGTCTTCTG
TGTAATTATTCCACACATGTATTATATCATTTGCCTTGCCTTCAAAGATTTGACACATTGGATGTGTCAG
CAAAGCAAATCAAGGAACTGGCAGATACCACAGCAATGAAAAAAATAATGTATTATAATATGCGTATAAA
AACTCTTCAGAGGCATCTTAAAGAAGACCTTGAAAAACTGAATGATCAAAAATGCAAATTACAAAAGTTG
CCAGAAGAACGAGTAAAATTATTCAGCTTTGTGAAGAAAACTTTGGAACGAGAACTGGCTGAACTCAAGG
GCTCGGGCAAAGGGCACAGTGATGGATCCAATAACAGTAAAGTAACTGATCCTGAAACACTGAAGAGTTG
TGAAACTGTCACTGAAGAACCAAGTCTTCAACAGAAGATATTGGCCAAACTAAATGCCTTGAATGAAAGG
GTAACATTCTGGAACAAAAAACTAGATGAAATTGAAGCAATTTATCATATTGAAGTAAAACAAAAGAAGA
AAAGTCATGGCTTATTGATCCCACTTTTGTTAATTGAGTTAGAGACTGTGGGAAATTTCCATTTTGAAGA
AGGCACTCGATCTGATGACTGGTTTAATTTCTGCTATGAATTAATTCTGTCACGTTTTTGTGCCTGGGAC
TTCAGAACATACGGTATTACAGGAGTAAAAGTAAAACGCATCATTAAAGTTAACAACCGTATTCTGAGAC
TAAAATTCGAAGAGAAATTTCAAAAGTTTTTGGAGAATGAAGATATGCATGATTCAGAGAGCTACCGAAG
GATGCTGGAATGCCTTTTTTATGTTTTTGATCCTGAAGTTTCAGTGAAGAAAAAGCATCTTCTACAAATA
CTTGAAAAAGGATTCAAAGACAGTGAAACAAGCAAGCTGCCTCTCAAAAAAGAAGCCATCATTGTTTCTA
ACAGTCTAAGTATAAGTGAGTGTCCCAGAATTGAATTTTTACAGCAAAAGCACAAAGATGAGAAGAAAAT
CTCTCTTAAGCATGAGCTCTTCAGACATGGCATCCTCCTCATTACAAAAGTTTTCCTTGGCCAGAGTGTT
CAGGCCCATGAAAAAGAATCCATCAGTCAATCCAACTATCCAATGGTTAATTCAGTGTTCATTCCTCGGA
AATATTTACTAAATTCTGTCATGGGACAAAGAAACTGTGATTGCAGTGTTCGGCAGTGCAAGTGGTTTGT
CTTTGATCATGACCTTGTTTTGCCGGAATATGTTGTTGAATTTGAGTATATTACAATGGTCAAGGCACCC
TCTTTATTTTCTGTATTCAACAATGTTATTCTAGAAGAAAGCAAAAAAAACCCAGAAGTATCAGTATTTT
CCAAGGATTTGAAATTTGATGATGAAGTTATAAAAATGGAGCCCAGAATCAAGGCCCGACCAAAACTGAT
TAGTTTGGATGATAAAACAATACTTTCCCTTGCAAAGACTAGCGTTTACAGTCATATTGTGAGTCTGAAT
CTACATGGAAACAGCTTGAGTAAATTGAGAGATCTCTCCAAGTTAACAGGACTTCGAAAACTAAACATTA
GCTTTAATGAATTTACCTGTTTAGATGATGTATACCACTTGTATAACCTTGAATATTTGGATGCAAGCCA
TAACCATGTGATAACCCTTGAGGGATTTAGAGGTCTGATGAAACTGAAGCACTTAGACTTGAGCTGGAAT
CAACTGAAAAAATCTGGCAATGAAATAAATATGTTATGCAAACACACCACAAGCCTTCTCACTCTTGATA
TTCAACATAATCCATGGCAAAAGCCAGCCACATTGAGGCTGAGTGTTATTGGCAGATTAAAGACTCTTAC
CCATTTAAATGGAGTCTTCATTTCTGAAGAAGAAGCAACAGCAGCTATGAAATTTATTGCAGGAACAAGG
ATTACTCAGTTATCTCTCTTACGGCATTCTAGTACTAAAGAGGAGAGACCACGGATACTTAGTATATGGC
CTTCTGCCAAAATTCTGACGCAGGTTTCAAAGTTAGGACCTCATTTACATCTGAGTGGAAACTGCTACTT
GAAGATAACTGCCTTAAATTTAGATGGACAACATCTTTTTGAAATCACAAATTTAGAAAAATTGGAAAAT
TTGAAATGGGCATCATTCAGCAATAATAATCTCACTAAAATGGAGGGTCTGGAATCCTGTATTAACTTGG
AAGAGCTCACATTAGATGGAAACTGCATCTCAAAGATAGAAGGTATTTCCAAGATGACTAAATTAACTCG
CCTCAGCATAAATAATAATCTTCTCACTGGTTGGGAAGAGCATACCTTTGATAACATGCTTCATCTTCAC
TCGCTTTCTCTTGAGAACAACAGAATCACTTCATTGAGTGGTTTACAAAAATCTTTTACTCTTGTTGAGT
TATACATAAGCAATAACTATATTGCTGTCAATCAGGAGATGCACAATTTAAAGGGTTTATGCAACTTGGT
CATTCTAGACATGTGTGGGAACATCATTATATGGAATCAAGAAAACTACCGGTTGTTTGTAATATTTCAT
CTTCCAGAACTGAAAGCTTTGGATGGGATACCAATTGAACCATCAGAGACTGACAGTGCAAAAGATTTGT
TTGGTGGTAGACTTACTTCTGACATGATTGCAGAACGACAAGGACATTCCAACTTCAAACAAATGCAAGA
ACTAAATTGGACTTCATCATCTATTAGAACAGTGGATTTGATTCCAGTCGACCAATTTAGAAATGTGTGT
AATGTGAATCTACAGAACAATCATCTTACCTCATTCAGTGGATTAATCTATCTACCTAATGTGAAGGTCT
TATGCCTTAACTATAATCATATTGAATCAATCATGCCCAGACTAAAGCCTCAGACTCACTTAACCAGTAG
ACAACTACTGTACCAGAAAGTGCCTTCAAGTGGCTATGGACAGCAAGGAATTTCAAAAACAAACAGAGAT
ATAATGAGCAGTGAAAATTTGCCTCCAATAATGCACAGTTTAGAAGTTCTTCATTTGGGCTACAATGGAA
TTTGTAATTTGATCCAGCTACAACTTAACAGACTAAGAAATTTAAAATTCCTCTTTCTACAGGGTAATGA
AATCAGCCAAGTTGAAGGGCTTGACAACTTAGTAGTCCTTCAAGAATTGGTAGTGGACCATAACCGCATC
CGATCATTTAATGACAGTGCTTTTGCCAAACCAAGTTCTTTATTGGCACTTCACTTGGAGGAAAACAGAC
TACGAGAACTGGGCAAATTACAATCTTTGGTAAAACTAGAGAAACTCTTCCTAGGATATAATAAAATCCA
GGATATCACAGAACTGGAAAAACTTGACGTTATCTCTACTCTCAGGGAGCTTACAGTGTATGGCAATCCA
ATTTGTAGAAAAATGCTACATCGCCACATGCTTATATTTCGACTGCCTAACTTACAGATGTTAGATGGAA
GTCCTGTGAATTCAGATGATAGGGCAAAAGCTGAATTTCACCTCGCTGAACTACAAGCAAAGAAAAACTC
GCTTATTCCTGTTACCCACTCTCCTATGGATGGCAGATCATTTGGCCAAGTGAAAACTCCTCCCATAGAG
ATAACAAATGTACTTCTGCCTAGTGGATTCAGCCATTACTTGGGATCTGACGTCACTTTAACTCCTGAAG
TTGAAGACAAAAAAAACAAGAATGCTGGGATTCTGACAAATAATCCTCGGAGCATCCATGCAGAAATAGC
TTTTCGGCAACTCAGAGGGATAAGTATCTCTCCATCTCTTTTATCACATCAGAATATTGCATCTCCTACT
GCACAAATATACCAGAGCAACCAAGATAAGAGAAGAATTTTTGGGAGCAACTTTCCAAGATCAAATCGAA
TGTAA

Translation (1494 aa):
MIESENLNQEEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFLGYPRIVGLSLFPNLTSLTIVAQDIKEIS
GLEPCLQLKELWIAECCIEKIEGLQECRNLEKLYLYFNKISKIENLEKLIKLKVLWLNHNTIKNIEGLQT
LKNLKDLNLAGNLINSIGRCLDSNEQLERLNLSGNQICSFKELTNLTRLPCLKDLCLNDPQYTTNPVCLL
CNYSTHVLYHLPCLQRFDTLDVSAKQIKELADTTAMKKIMYYNMRIKTLQRHLKEDLEKLNDQKCKLQKL
PEERVKLFSFVKKTLERELAELKGSGKGHSDGSNNSKVTDPETLKSCETVTEEPSLQQKILAKLNALNER
VTFWNKKLDEIEAIYHIEVKQKKKSHGLLIPLLLIELETVGNFHFEEGTRSDDWFNFCYELILSRFCAWD
FRTYGITGVKVKRIIKVNNRILRLKFEEKFQKFLENEDMHDSESYRRMLECLFYVFDPEVSVKKKHLLQI
LEKGFKDSETSKLPLKKEAIIVSNSLSISECPRIEFLQQKHKDEKKISLKHELFRHGILLITKVFLGQSV
QAHEKESISQSNYPMVNSVFIPRKYLLNSVMGQRNCDCSVRQCKWFVFDHDLVLPEYVVEFEYITMVKAP
SLFSVFNNVILEESKKNPEVSVFSKDLKFDDEVIKMEPRIKARPKLISLDDKTILSLAKTSVYSHIVSLN
LHGNSLSKLRDLSKLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNHVITLEGFRGLMKLKHLDLSWN
QLKKSGNEINMLCKHTTSLLTLDIQHNPWQKPATLRLSVIGRLKTLTHLNGVFISEEEATAAMKFIAGTR
ITQLSLLRHSSTKEERPRILSIWPSAKILTQVSKLGPHLHLSGNCYLKITALNLDGQHLFEITNLEKLEN
LKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEGISKMTKLTRLSINNNLLTGWEEHTFDNMLHLH
SLSLENNRITSLSGLQKSFTLVELYISNNYIAVNQEMHNLKGLCNLVILDMCGNIIIWNQENYRLFVIFH
LPELKALDGIPIEPSETDSAKDLFGGRLTSDMIAERQGHSNFKQMQELNWTSSSIRTVDLIPVDQFRNVC
NVNLQNNHLTSFSGLIYLPNVKVLCLNYNHIESIMPRLKPQTHLTSRQLLYQKVPSSGYGQQGISKTNRD
IMSSENLPPIMHSLEVLHLGYNGICNLIQLQLNRLRNLKFLFLQGNEISQVEGLDNLVVLQELVVDHNRI
RSFNDSAFAKPSSLLALHLEENRLRELGKLQSLVKLEKLFLGYNKIQDITELEKLDVISTLRELTVYGNP
ICRKMLHRHMLIFRLPNLQMLDGSPVNSDDRAKAEFHLAELQAKKNSLIPVTHSPMDGRSFGQVKTPPIE
ITNVLLPSGFSHYLGSDVTLTPEVEDKKNKNAGILTNNPRSIHAEIAFRQLRGISISPSLLSHQNIASPT
AQIYQSNQDKRRIFGSNFPRSNRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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