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Report for CCDS94231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94231.1 Public Homo sapiens 7 LOC728743 24 110 108 CCDS HistoryNCBI Gene:728743Re-query CCDS DB by CCDS ID:94231.1Re-query CCDS DB by GeneID:728743See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 94231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000498682.3 ENSP00000492887.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498682.3Link to Ensembl Protein Viewer:ENSP00000492887.1Re-query CCDS DB by Nucleotide ID:ENST00000498682Re-query CCDS DB by Protein ID:ENSP00000492887
Original member Current member EBI ENST00000642087.2 ENSP00000493097.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642087.2Link to Ensembl Protein Viewer:ENSP00000493097.1Re-query CCDS DB by Nucleotide ID:ENST00000642087Re-query CCDS DB by Protein ID:ENSP00000493097
Original member Current member NCBI NM_001395974.1 NP_001382903.1 Accepted alive Link to Nucleotide Sequence:NM_001395974.1Link to Protein Sequence:NP_001382903.1Re-query CCDS DB by Nucleotide ID:NM_001395974Re-query CCDS DB by Protein ID:NP_001382903Link to BLAST:NP_001382903.1
Original member Current member NCBI NM_001395975.1 NP_001382904.1 Accepted alive Link to Nucleotide Sequence:NM_001395975.1Link to Protein Sequence:NP_001382904.1Re-query CCDS DB by Nucleotide ID:NM_001395975Re-query CCDS DB by Protein ID:NP_001382904Link to BLAST:NP_001382904.1
Original member Current member NCBI NM_001395976.1 NP_001382905.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395976.1Link to Protein Sequence:NP_001382905.1Re-query CCDS DB by Nucleotide ID:NM_001395976Re-query CCDS DB by Protein ID:NP_001382905Link to BLAST:NP_001382905.1

Chromosomal Locations for CCDS 94231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 150407612 150408223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGACCGAGCTGGCGTCCTCCGGGGGCGGGTCCCCTGCGGGGGACGGGGAGGAGGGTCTGGGGGACGAGC
GAGGCCTGGTCATCCACCACCCTGCAGAGGAGCAGCCCTACCGCTGCCCGCTGTGCGGCCAGACCTTCTC
GCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGCCGGAGCGGGCCGCGCGGCTGCCTTCGTGTGT
CCCGAGTGCGGCAAGGCCTTCAGCGTCAAGCACAACCTCGAGGTGCACCAGCGCACGCACACCGGGGAGC
GGCCCTTCCCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAACCTGCTCACGCACCAGCGCAT
CCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGCCGCTGCTTCCGCGAGCCGCGCTTCCTGCTC
AACCACCAGCGCACCCACGCGCGCATGCCCGCGCCGCACCCGCGCCGCCCCGGCGTCTTCGGGGAGCGGC
GGCCCTACTTCTGCCCCCGCTGCGGCAAGAGCTTCGCGCGCGAGGGCTCGCTCAAGACCCATCAGCGCAG
CCACGGCCACGGGCCCGAGGGCCAGGCGGCCCACTTAGGACGCGTGCTATGA

Translation (203 aa):
MTELASSGGGSPAGDGEEGLGDERGLVIHHPAEEQPYRCPLCGQTFSQQPSLVRHQKAHAGAGRAAAFVC
PECGKAFSVKHNLEVHQRTHTGERPFPCPECGRCFSLKQNLLTHQRIHSGEKPHQCAQCGRCFREPRFLL
NHQRTHARMPAPHPRRPGVFGERRPYFCPRCGKSFAREGSLKTHQRSHGHGPEGQAAHLGRVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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