NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92661.1 Public Homo sapiens 19 SAXO3 24 110 108 CCDS HistoryNCBI Gene:101059948Re-query CCDS DB by CCDS ID:92661.1Re-query CCDS DB by GeneID:101059948See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000637680.2 ENSP00000489727.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000637680.2Link to Ensembl Protein Viewer:ENSP00000489727.1Re-query CCDS DB by Nucleotide ID:ENST00000637680Re-query CCDS DB by Protein ID:ENSP00000489727
Original member Current member NCBI NM_001396011.1 NP_001382940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001396011.1Link to Protein Sequence:NP_001382940.1Re-query CCDS DB by Nucleotide ID:NM_001396011Re-query CCDS DB by Protein ID:NP_001382940Link to BLAST:NP_001382940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382940.1 334 A0A1B0GTJ6 334 100% 0 0

Chromosomal Locations for CCDS 92661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49017968 49018340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49018873 49019000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49019647 49019808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49019909 49020109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49020375 49020515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCCAGTGGCACCCTGGCTCCGGGCTGTCGTATCTCTGCAACCGAGGTACCTGGATCCAGGCCCAACT
GCCATCTCACCAGCAGCTACTTTTCCCACCGCATTATCCCACCCATACCCTTCACCCCGCCCACGGTGCA
GTCCACGGTCGCGGACCCTCTACCCCAAGTTGCAAAGCAGGATTCTCACAACTGGGCTTTCGACGAGGTC
CTCAGCAGATGGGAGACAACCTCTGGCTCGGCCTACGTGCCCAAGACCCATGGCGGGCCCTGCGCCCAGC
CCAGAGCCCCAGAGCCTGCAGACCCCACGCGGACTGTGGGGATCAAGGATTTAGGAGAAAAGCTCAGACA
CCGCGGCTGGCGCCTCCCACTGACCACAAAGTACCAGAGCAGCGAGACGAGGGCGCAGTACACTGGCTCT
CCCAGCGGGGACCCGCGCGCCCCGGAATACTTCGGGCCCCAGCCCCCACAACTCGCAGACCACCACCGCG
GGGGTCCTTCCCAGGCTCTAATTGCCTGGACGAAGAACCCCGAGCTGTCTGGCCGGCCTTTCACAGTATC
CGACCGGGGCGTCCTGGACCGCCGCCAGCTCTATCTGACCACCTCGGCGCGGGACTTTCGGTTCTATCCC
AAGACGGAGCTGTCCGGATACCCCCGCAAGGACTCCCTGACCTACTGGAGCTTCGAAGAGACGCCCCAGG
TCTGGAGCCACGGCCCGCAGCGGCCGCCCTGTCCGCGCTCCTCCCGGCCGCCCCGACCACCGCGGGTCCG
CGTGCCGCGCGTCAGCCCGGTGACCTCGGCCATGCCGCACCGGGGAGCCCTGTCTCTGGCTCAGGAGTCC
TACAGCCCCCTGCTGCACCCGCTCCGGCGGCTCGACCGCTTCTGCCCGCTGGAGGCGCCCTGGGGCGGCC
CGCACTGGAAGCCCCTGCGGGGCATCTACAGCGTGCCGAAAGCCTACAGTACCGAGAACTCCAGCTATGG
CAGCTTGAAGCCGGCGCTGGTGTGA

Translation (334 aa):
MASGTLAPGCRISATEVPGSRPNCHLTSSYFSHRIIPPIPFTPPTVQSTVADPLPQVAKQDSHNWAFDEV
LSRWETTSGSAYVPKTHGGPCAQPRAPEPADPTRTVGIKDLGEKLRHRGWRLPLTTKYQSSETRAQYTGS
PSGDPRAPEYFGPQPPQLADHHRGGPSQALIAWTKNPELSGRPFTVSDRGVLDRRQLYLTTSARDFRFYP
KTELSGYPRKDSLTYWSFEETPQVWSHGPQRPPCPRSSRPPRPPRVRVPRVSPVTSAMPHRGALSLAQES
YSPLLHPLRRLDRFCPLEAPWGGPHWKPLRGIYSVPKAYSTENSSYGSLKPALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH